CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70146
CDX83576	cytoskeleton, nucleus
CDX89497
CDX98847
CDY04187	cytoskeleton, nucleus
CDY13739
CDY25614
CDY39177	cytoskeleton, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05510.1	CDX89497	AT2G22640.1	25262777
AT5G05510.1	CDY13739	AT2G22640.1	25262777
AT5G05510.1	CDY25614	AT2G22640.1	25262777
AT5G05510.1	CDX83576	AT3G25980.1	25262777
AT5G05510.1	CDY04187	AT3G25980.1	25262777
AT5G05510.1	CDY39177	AT3G25980.1	25262777
AT5G05510.1	CDX83576	AT3G25980.1	25262777
AT5G05510.1	CDY04187	AT3G25980.1	25262777
AT5G05510.1	CDY39177	AT3G25980.1	25262777
AT5G05510.1	CDX70146	AT5G05510.1	25262777
AT5G05510.1	CDX98847	AT5G05510.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70146	Canola	nucleus	95.97	94.7
Bra009117.1-P	Field mustard	nucleus	81.21	80.13
AT5G05510.1	Thale cress	nucleus	72.48	68.79
KRH31175	Soybean	nucleus	55.93	47.53
KRG97697	Soybean	nucleus	54.81	46.93
GSMUA_Achr5P14270_001	Banana	cytosol	49.66	41.26
VIT_13s0067g01530.t01	Wine grape	nucleus	54.14	40.0
Solyc06g051040.2.1	Tomato	cytosol, nucleus, plastid	51.45	39.12
Os11t0128700-00	Rice	nucleus	45.19	32.53
Os12t0125300-01	Rice	nucleus	45.19	32.48
EES09179	Sorghum	nucleus	44.3	32.04
HORVU7Hr1G029580.3	Barley	nucleus	43.18	31.08
TraesCSU01G188700.1	Wheat	nucleus	42.28	30.48
TraesCS5A01G142400.1	Wheat	nucleus	42.28	30.48
HORVU5Hr1G045460.1	Barley	mitochondrion	43.18	29.83
Zm00001d023279_P001	Maize	nucleus	41.61	29.06
TraesCS5B01G141100.1	Wheat	nucleus, plastid	42.28	28.64
TraesCS5D01G149700.1	Wheat	plastid	42.06	28.53
EES16550	Sorghum	mitochondrion, nucleus	43.62	27.23
CDX95868	Canola	cytosol	5.82	18.18
CDY46599	Canola	cytosol	12.08	17.59
CDY27958	Canola	nucleus	14.32	16.45
CDY61325	Canola	cytosol	13.2	15.82
CDY17186	Canola	nucleus	13.65	15.44
CDY23726	Canola	nucleus	8.72	12.46
CDX81974	Canola	cytosol	12.3	11.04
CDY13862	Canola	cytosol	12.3	11.02

Protein Annotations

EnsemblPlants:CDX98847	EnsemblPlantsGene:GSBRNA2T00106948001	Gene3D:1.25.40.430	GO:A0A078ECR5	GO:GO:0007049	GO:GO:0007094
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:Bub1/Mad3	InterPro:IPR013212	InterPro:Mad3/Bub1_I
ncoils:Coil	PANTHER:PTHR14030	PANTHER:PTHR14030:SF2	PFAM:PF08311	PFscan:PS51489	ProteinID:CDX98847
ProteinID:CDX98847.1	SEG:seg	SMART:SM00777	UniParc:UPI0004EDD9BE	MapMan:13.3.5.5.5	:

Description

BnaC09g49880D

Coordinates

chrLK031907:-:260434..262273

Molecular Weight (calculated)

51763.8 Da

IEP (calculated)

5.109

GRAVY (calculated)

-0.917

Length

447 amino acids

Sequence
(BLAST)

001: MAKNENGYES LLASLIVDIK SYSGKDHLLP WIRGIKKMKE SLPPQILNEK LPRFLQKCAQ SFESDKRYRN DSRYIRVWLQ LMDFVDDPKA LLRSMEANSV
101: GTKRSLFYQA YALHYEKLKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFL SRMERHKRKK TQRQELKVSE KHQKAERSQK EPRLAINDET PVLNFVDKEA
201: ENACHHGLVD PTINMKEAMN AINNMFKEPI ETAPLQRKPQ QRSQDKENQG GFEVFVDENQ GSFEIFVDDE NDDETTDDND ESGKGFVFLQ PRDHSPESSG
301: EADRHNSPPR ARFREDTVVR RFVGSAISEE PAVENVCHHG LVDPTVNLKE AMEDINNMFG EPIDFVRPNR SKNKEKAVVQ EKKPDAAAGF SILEDDDDEA
401: EEEHQETNRV TQMSPRKANE RDLFEPTVCT KVALDEINKL FAMPMDF

Best Arabidopsis Sequence Match ( AT5G05510.1 )
(BLAST)

001: MAKNENGYEN LLASLIVDIK SYSGKDHLLP WIRGVKKMKE SLPSQILNEK LPRFLQKCAE SFESDKRYKN DSRYIRVWLQ LMDFVDDPRA LLRTMEAKSI
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F

Arabidopsis Description

At5g05510 [Source:UniProtKB/TrEMBL;Acc:Q9FFG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.