CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95868	Canola	cytosol	27.69	59.44
CDY61325	Canola	cytosol	69.38	57.1
Bra015240.1-P	Field mustard	nucleus	40.39	53.45
CDY27958	Canola	nucleus	66.45	52.44
AT2G33560.2	Thale cress	nucleus	67.1	52.02
CDY17186	Canola	nucleus	65.8	51.14
CDY23726	Canola	nucleus	42.02	41.21
VIT_18s0122g00470.t01	Wine grape	nucleus	49.19	39.63
KRH49504	Soybean	cytoskeleton, cytosol, nucleus	47.56	38.02
Solyc04g082900.2.1	Tomato	nucleus	47.88	37.79
KRG89179	Soybean	cytosol	47.23	37.76
PGSC0003DMT400025922	Potato	cytosol	46.91	37.21
Zm00001d015863_P001	Maize	cytosol	43.65	34.63
Os02t0193600-01	Rice	nucleus	43.32	33.42
TraesCS6B01G195800.1	Wheat	cytosol	40.39	31.39
EES04683	Sorghum	cytosol	41.37	31.36
TraesCS6D01G157200.1	Wheat	cytosol, nucleus, plastid	40.07	31.22
TraesCS6A01G168100.1	Wheat	nucleus	40.07	30.9
HORVU6Hr1G034110.3	Barley	nucleus	39.09	29.27
GSMUA_Achr1P16590_001	Banana	nucleus	40.39	29.04
GSMUA_Achr3P11640_001	Banana	endoplasmic reticulum	39.74	26.7
CDX70146	Canola	nucleus	18.57	12.58
CDX98847	Canola	nucleus	17.59	12.08
CDX81974	Canola	cytosol	19.22	11.85
CDY13862	Canola	cytosol	18.89	11.62

Protein Annotations

EnsemblPlants:CDY46599	EnsemblPlantsGene:GSBRNA2T00085859001	Gene3D:1.25.40.430	GO:A0A078IB98	GO:GO:0007049	GO:GO:0007094
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:Bub1/Mad3	InterPro:IPR013212	InterPro:Mad3/Bub1_I
PANTHER:PTHR14030	PANTHER:PTHR14030:SF4	PFAM:PF08311	PFscan:PS51489	ProteinID:CDY46599	ProteinID:CDY46599.1
SMART:SM00777	UniParc:UPI0004EE95DA	UniProt:A0A078IB98	MapMan:13.3.5.5.5	:	:

Description

BnaCnng14210DBnaCnng14210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IB98]

Coordinates

chrLK032678:-:68406..70258

Molecular Weight (calculated)

35121.2 Da

IEP (calculated)

9.433

GRAVY (calculated)

-0.583

Length

307 amino acids

Sequence
(BLAST)

001: MVKRGKNLRV KELIEDIDEY DGDDPLFPWI KCVKWVQEAF PPGGECSGLL VIYEQCFTKG KWFILLKAEH CADAEVIYKF LEVNDIGRTL GLYYRDFGLH
101: MEFKGKVKTA NEIFNLGISR NAKPVEKLND AYKKFIVRTM RRIKAVDDEP KENDLPSRSF GTVLQTLGPQ AKRTKLNHSS KAPLAVYKDT TTADQTESDK
201: SKLEFGSWLM LGGRAERNKE NNALPGKWAA FKVPQKPIVR TAASSFKVFV DEEECIDEGL EKRKKIETIS PSSSNVLPLN DGREIKKETE LLRQNPLRHF
301: SRNSFLR

Best Arabidopsis Sequence Match ( AT2G33560.1 )
(BLAST)

001: MAAETKVQVS DPEAEFLNSK QETGYEWELF KENVRPLKRG RNVGILNHAL KSHSDHQLRK NLIEKRRNLI EAIDEYEGDD PLSPWIECIK WVQEAFPPGG
101: ECSGLLVIYE QCVRKFWHSE RYKDDLRYLK VWLEYAEHCA DAEVIYKFLE VNEIGKTHAV YYIAYALHIE FKNKVKTANE IFNLGISRDA KPVEKLNDAY
201: KKFMVRTMRR SNTADEEPKE NNDLPSRSFG TLLSRGDNNA RRQALGSSNP QAKKLKPNQS SKTPFAIYAD AVSDTTSGNQ PESDKSRPEF GSWLMLGGRA
301: ERNKENNSLP RKWASFKVPQ KPIVRTVAAA SASTFEVFVD EEECTEEEEE KKKNDETISS SSNVLPLNGG REIKKETELL RQNPLRHFPP NSFLR

Arabidopsis Description

BUBR1BUBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VU51]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.