CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46599	Canola	cytosol	57.1	69.38
CDX95868	Canola	cytosol	23.59	61.54
Bra015240.1-P	Field mustard	nucleus	32.98	53.02
CDY27958	Canola	nucleus	52.01	49.87
CDY17186	Canola	nucleus	50.67	47.85
CDY23726	Canola	nucleus	39.41	46.96
AT2G33560.2	Thale cress	nucleus	48.79	45.96
VIT_18s0122g00470.t01	Wine grape	nucleus	39.95	39.11
Solyc04g082900.2.1	Tomato	nucleus	36.19	34.7
Zm00001d015863_P001	Maize	cytosol	35.66	34.37
PGSC0003DMT400025922	Potato	cytosol	35.39	34.11
KRH49504	Soybean	cytoskeleton, cytosol, nucleus	34.85	33.85
KRG89179	Soybean	cytosol	34.32	33.33
Os02t0193600-01	Rice	nucleus	34.32	32.16
EES04683	Sorghum	cytosol	33.78	31.11
TraesCS6B01G195800.1	Wheat	cytosol	32.17	30.38
TraesCS6D01G157200.1	Wheat	cytosol, nucleus, plastid	31.64	29.95
TraesCS6A01G168100.1	Wheat	nucleus	31.64	29.65
HORVU6Hr1G034110.3	Barley	nucleus	31.1	28.29
GSMUA_Achr1P16590_001	Banana	nucleus	30.56	26.7
GSMUA_Achr3P11640_001	Banana	endoplasmic reticulum	31.9	26.04
CDX70146	Canola	nucleus	16.09	13.24
CDX98847	Canola	nucleus	15.82	13.2
CDX81974	Canola	cytosol	15.55	11.65
CDY13862	Canola	cytosol	15.55	11.62

Protein Annotations

EnsemblPlants:CDY61325	EnsemblPlantsGene:GSBRNA2T00033717001	Gene3D:1.25.40.430	GO:A0A078JAS9	GO:GO:0007049	GO:GO:0007094
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:Bub1/Mad3	InterPro:IPR013212	InterPro:Mad3/Bub1_I
PANTHER:PTHR14030	PANTHER:PTHR14030:SF4	PFAM:PF08311	PFscan:PS51489	ProteinID:CDY61325	ProteinID:CDY61325.1
SEG:seg	SMART:SM00777	UniParc:UPI0004EF3C67	UniProt:A0A078JAS9	MapMan:13.3.5.5.5	:

Description

BnaC06g43250DBnaC06g43250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAS9]

Coordinates

chrLK033985:-:15940..19818

Molecular Weight (calculated)

42634.9 Da

IEP (calculated)

9.014

GRAVY (calculated)

-0.625

Length

373 amino acids

Sequence
(BLAST)

001: MDYTISFSSF TQYTYLQADD LTLLALNAKL VIRAFANLES AAEFEESLEN QLKDMVKRGK NLRVKLIEDI DEYDGEDPLF PWIKCVKWMQ EAFPPGGECS
101: GLLVIYEQCF TKGKWFILLK AENCADAEVI YKFLEVNDIG RMHGLYYRDY GLHMEFKGKV KTANEIFNLR ISRNAKPVEK LNDAYKKFMV RTMRRTKTVD
201: DEPKENDLPS RSFGTVLSRV DNNRRQALGP QANRTKLNHS SKAPLAVYKD TTTGDQTESD KSKPEFGSGL MLGGRAERNK ENNVLPGKWA AFKVPQKPIV
301: RTAASFFEVF GVEKRKKIET ISPSSSNVLP LNDGRDKERN RAAATEPFKT LPSQQLPTMI YENNHHRQQC SEI

Best Arabidopsis Sequence Match ( AT2G33560.1 )
(BLAST)

001: MAAETKVQVS DPEAEFLNSK QETGYEWELF KENVRPLKRG RNVGILNHAL KSHSDHQLRK NLIEKRRNLI EAIDEYEGDD PLSPWIECIK WVQEAFPPGG
101: ECSGLLVIYE QCVRKFWHSE RYKDDLRYLK VWLEYAEHCA DAEVIYKFLE VNEIGKTHAV YYIAYALHIE FKNKVKTANE IFNLGISRDA KPVEKLNDAY
201: KKFMVRTMRR SNTADEEPKE NNDLPSRSFG TLLSRGDNNA RRQALGSSNP QAKKLKPNQS SKTPFAIYAD AVSDTTSGNQ PESDKSRPEF GSWLMLGGRA
301: ERNKENNSLP RKWASFKVPQ KPIVRTVAAA SASTFEVFVD EEECTEEEEE KKKNDETISS SSNVLPLNGG REIKKETELL RQNPLRHFPP NSFLR

Arabidopsis Description

BUBR1BUBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VU51]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.