Factsheet for VIT_18s0122g00470.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025922	Potato	cytosol	64.04	63.05
KRG89179	Soybean	cytosol	62.73	62.24
Solyc04g082900.2.1	Tomato	nucleus	63.25	61.95
KRH49504	Soybean	cytoskeleton, cytosol, nucleus	62.2	61.72
CDY27958	Canola	nucleus	56.69	55.53
CDY17186	Canola	nucleus	57.48	55.44
AT2G33560.2	Thale cress	nucleus	56.17	54.04
Bra005485.1-P	Field mustard	nucleus	53.02	54.01
Os02t0193600-01	Rice	nucleus	53.54	51.26
Zm00001d015863_P001	Maize	cytosol	51.44	50.65
TraesCS6B01G195800.1	Wheat	cytosol	51.18	49.37
TraesCS6A01G168100.1	Wheat	nucleus	51.44	49.25
TraesCS6D01G157200.1	Wheat	cytosol, nucleus, plastid	50.92	49.24
CDY46599	Canola	cytosol	39.63	49.19
EES04683	Sorghum	cytosol	49.34	46.42
GSMUA_Achr1P16590_001	Banana	nucleus	50.13	44.73
CDX95868	Canola	cytosol	16.54	44.06
CDY23726	Canola	nucleus	35.7	43.45
GSMUA_Achr3P11640_001	Banana	endoplasmic reticulum	49.87	41.58
HORVU6Hr1G034110.3	Barley	nucleus	43.83	40.73
CDY61325	Canola	cytosol	39.11	39.95
Bra015240.1-P	Field mustard	nucleus	20.47	33.62
VIT_12s0028g03360.t01	Wine grape	nucleus	16.8	11.59
VIT_13s0067g01530.t01	Wine grape	nucleus	16.27	10.25

Protein Annotations

Gene3D:1.25.40.430	EntrezGene:100244507	wikigene:100244507	MapMan:13.3.5.5.5	InterPro:Bub1/Mad3	ProteinID:CBI40782
ProteinID:CBI40782.3	UniProt:D7UDG7	EMBL:FN596759	GO:GO:0000003	GO:GO:0000778	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006468	GO:GO:0007049	GO:GO:0007094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0051754
InterPro:IPR013212	EntrezGene:LOC100244507	wikigene:LOC100244507	InterPro:Mad3/Bub1_I	PFAM:PF08311	PFscan:PS51489
PANTHER:PTHR14030	PANTHER:PTHR14030:SF4	SMART:SM00777	TIGR:TC54772	UniParc:UPI00019851D5	ArrayExpress:VIT_18s0122g00470
EnsemblPlantsGene:VIT_18s0122g00470	EnsemblPlants:VIT_18s0122g00470.t01	unigene:Vvi.19320	RefSeq:XP_002273598	RefSeq:XP_002273598.2	RefSeq:XP_010664033.1

Description

No Description!

Coordinates

chr18:+:399170..410942

Molecular Weight (calculated)

43913.9 Da

IEP (calculated)

8.113

GRAVY (calculated)

-0.827

Length

381 amino acids

Sequence
(BLAST)

001: MEDVQRLDPE TEFLCSKQET GNEWELFKEN VRPLKRGRNI HLLNNALKAQ TDNQLKHSLL ENRRKLIQAI DEYQGDDPLQ PWIRCIKWVQ EAFPPGGDYS
101: GLVVIYEQCA RTFWHEDRYK DDLRYLKVWL EYAENCVDAE VIYSFLDANK IGQSHSSYYI SYALHMESKN KVKCANDIFN LGIERNAQPI EKLKAAYKKF
201: FARCLTRPKA TEDDLTEKHL PVRSFGTVLA RGENQRQTAG GSDLARKKLK PDRNNAISIY KDTDTGVSMV HQPDGSNNEM KLWHSLGSRA ERNKENNAIP
301: AKWTSYKIPQ RAVPRIGRPA ATPRIEVFVD EEYAEMPEMG GEDGKPSTSQ LKQGDGVDLK RETQLLRENP LRNFPLNSLP R

Best Arabidopsis Sequence Match ( AT2G33560.1 )
(BLAST)

001: MAAETKVQVS DPEAEFLNSK QETGYEWELF KENVRPLKRG RNVGILNHAL KSHSDHQLRK NLIEKRRNLI EAIDEYEGDD PLSPWIECIK WVQEAFPPGG
101: ECSGLLVIYE QCVRKFWHSE RYKDDLRYLK VWLEYAEHCA DAEVIYKFLE VNEIGKTHAV YYIAYALHIE FKNKVKTANE IFNLGISRDA KPVEKLNDAY
201: KKFMVRTMRR SNTADEEPKE NNDLPSRSFG TLLSRGDNNA RRQALGSSNP QAKKLKPNQS SKTPFAIYAD AVSDTTSGNQ PESDKSRPEF GSWLMLGGRA
301: ERNKENNSLP RKWASFKVPQ KPIVRTVAAA SASTFEVFVD EEECTEEEEE KKKNDETISS SSNVLPLNGG REIKKETELL RQNPLRHFPP NSFLR

Arabidopsis Description

BUBR1BUBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VU51]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.