Factsheet for PGSC0003DMT400025922

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082900.2.1	Tomato	nucleus	90.18	89.72
VIT_18s0122g00470.t01	Wine grape	nucleus	63.05	64.04
KRG89179	Soybean	cytosol	58.66	59.11
KRH49504	Soybean	cytoskeleton, cytosol, nucleus	58.4	58.85
CDY27958	Canola	nucleus	56.59	56.3
CDY17186	Canola	nucleus	56.33	55.19
AT2G33560.2	Thale cress	nucleus	56.07	54.8
Bra005485.1-P	Field mustard	nucleus	52.71	54.55
TraesCS6D01G157200.1	Wheat	cytosol, nucleus, plastid	50.65	49.75
Zm00001d015863_P001	Maize	cytosol	49.61	49.61
TraesCS6B01G195800.1	Wheat	cytosol	50.39	49.37
TraesCS6A01G168100.1	Wheat	nucleus	50.39	48.99
Os02t0193600-01	Rice	nucleus	49.35	47.99
EES04683	Sorghum	cytosol	49.35	47.16
CDY46599	Canola	cytosol	37.21	46.91
GSMUA_Achr1P16590_001	Banana	nucleus	50.13	45.43
CDX95868	Canola	cytosol	16.02	43.36
GSMUA_Achr3P11640_001	Banana	endoplasmic reticulum	49.61	42.01
CDY23726	Canola	nucleus	33.85	41.85
HORVU6Hr1G034110.3	Barley	nucleus	42.89	40.49
CDY61325	Canola	cytosol	34.11	35.39
Bra015240.1-P	Field mustard	nucleus	18.35	30.6
PGSC0003DMT400082809	Potato	cytosol, nucleus, plastid	17.57	12.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400025922	EnsemblPlantsGene:PGSC0003DMG400010009	EntrezGene:102589402	Gene3D:1.25.40.430	GO:GO:0007049	GO:GO:0007094
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:Bub1/Mad3	InterPro:IPR013212	InterPro:Mad3/Bub1_I
PANTHER:PTHR14030	PANTHER:PTHR14030:SF4	PFAM:PF08311	PFscan:PS51489	PGSC:PGSC0003DMG400010009	RefSeq:XP_006342196.1
SMART:SM00777	UniParc:UPI0002949028	UniProt:M1AMC9	MapMan:13.3.5.5.5	:	:

Description

Bubr1 [Source:PGSC_GENE;Acc:PGSC0003DMG400010009]

Coordinates

chr4:-:72032333..72036910

Molecular Weight (calculated)

44290.6 Da

IEP (calculated)

8.528

GRAVY (calculated)

-0.738

Length

387 amino acids

Sequence
(BLAST)

001: MEKVGDYVLD PETEFLASKQ ETGHEWELFK ENVRPLKRGR NVNLLNDALK SSTDYQLKKS LLDKRRALIG AIDQYKGEDP LLPWLQCIKW VQEAFPPGGD
101: SSGLIVIYEQ CVRTFWHDER YKDDLRYLKV WLEYAENCMD AEVIYSFLEA NKIGLTHSSF YIAYALHMES HNKIKTANEI FNRGLSMNAE PEEKLKASYK
201: KFLSRSMGRP KAAEEELTEH QLPMRSFGTL LARGEARNQT TGTSELSRKK MKLDRAQGSL FSIYKDANAG MSSTLQSEIP KLENTSWHCL GARADRNKEN
301: QAIPSKWTSN KIPQRHGLRN RGATTTTPCL EIFVDEECAK AQEKDSAAGV KASSLQLRRG DDKDIKKETE LLRENPLRYF PPSSLPR

Best Arabidopsis Sequence Match ( AT2G33560.1 )
(BLAST)

001: MAAETKVQVS DPEAEFLNSK QETGYEWELF KENVRPLKRG RNVGILNHAL KSHSDHQLRK NLIEKRRNLI EAIDEYEGDD PLSPWIECIK WVQEAFPPGG
101: ECSGLLVIYE QCVRKFWHSE RYKDDLRYLK VWLEYAEHCA DAEVIYKFLE VNEIGKTHAV YYIAYALHIE FKNKVKTANE IFNLGISRDA KPVEKLNDAY
201: KKFMVRTMRR SNTADEEPKE NNDLPSRSFG TLLSRGDNNA RRQALGSSNP QAKKLKPNQS SKTPFAIYAD AVSDTTSGNQ PESDKSRPEF GSWLMLGGRA
301: ERNKENNSLP RKWASFKVPQ KPIVRTVAAA SASTFEVFVD EEECTEEEEE KKKNDETISS SSNVLPLNGG REIKKETELL RQNPLRHFPP NSFLR

Arabidopsis Description

BUBR1BUBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VU51]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.