CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27958	Canola	nucleus	92.91	94.34
Bra005485.1-P	Field mustard	nucleus	84.56	89.3
AT2G33560.2	Thale cress	nucleus	74.18	73.99
CDY46599	Canola	cytosol	51.14	65.8
CDY23726	Canola	nucleus	49.87	62.94
CDX95868	Canola	cytosol	22.03	60.84
VIT_18s0122g00470.t01	Wine grape	nucleus	55.44	57.48
PGSC0003DMT400025922	Potato	cytosol	55.19	56.33
KRH49504	Soybean	cytoskeleton, cytosol, nucleus	54.43	55.99
KRG89179	Soybean	cytosol	53.92	55.47
Solyc04g082900.2.1	Tomato	nucleus	54.18	55.01
CDY61325	Canola	cytosol	47.85	50.67
Zm00001d015863_P001	Maize	cytosol	46.84	47.8
Os02t0193600-01	Rice	nucleus	47.09	46.73
TraesCS6B01G195800.1	Wheat	cytosol	46.33	46.33
TraesCS6D01G157200.1	Wheat	cytosol, nucleus, plastid	45.57	45.69
EES04683	Sorghum	cytosol	46.84	45.68
TraesCS6A01G168100.1	Wheat	nucleus	45.82	45.48
GSMUA_Achr1P16590_001	Banana	nucleus	46.58	43.09
GSMUA_Achr3P11640_001	Banana	endoplasmic reticulum	44.56	38.51
HORVU6Hr1G034110.3	Barley	nucleus	39.49	38.05
CDX70146	Canola	nucleus	15.95	13.91
CDX98847	Canola	nucleus	15.44	13.65
CDX81974	Canola	cytosol	15.7	12.45
CDY13862	Canola	cytosol	15.7	12.42

Protein Annotations

Gene3D:1.25.40.430	MapMan:13.3.5.5.5	GO:A0A078FW81	UniProt:A0A078FW81	InterPro:Bub1/Mad3	EnsemblPlants:CDY17186
ProteinID:CDY17186	ProteinID:CDY17186.1	ncoils:Coil	GO:GO:0007049	GO:GO:0007094	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00095250001	InterPro:IPR013212	InterPro:Mad3/Bub1_I	PFAM:PF08311
PFscan:PS51489	PANTHER:PTHR14030	PANTHER:PTHR14030:SF4	SMART:SM00777	UniParc:UPI0004EE725C	SEG:seg

Description

BnaA05g10020DBnaA05g10020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FW81]

Coordinates

chrLK032071:-:346266..348358

Molecular Weight (calculated)

45760.7 Da

IEP (calculated)

6.687

GRAVY (calculated)

-0.955

Length

395 amino acids

Sequence
(BLAST)

001: MAETRVEISD PESEFFASKQ ETGHEWELFK ENVRPLKRGR NVRLLNHALK SHTDHHLRKT LVEKRRKLIE EIDEYDGDDP LFPWIQCIKW VQEAFPPGGE
101: CSGLLVIYEQ CVRKFWHSER YKDDLRYLKV WLEYAEHCAD AEVIYKFLEV NEIGKTHALY YIAYALHMEF KSKVKTANEI FNLGISRNAK PVEKLNDAYK
201: KFMVRTMRRP NTADEEPKEN NNDLPSRSFG TVLSRVDNNN TGRQALGPQA KKPKLNQSSK APLSIYTDTT SGNQQQESDK SKPEYGSWLM LGGRAERNKE
301: NNSLPGKWKT FKVPQKPVVR TPAASSFEVF VDEEEEEEEE EECTEEGGEK KTKSETNSSS SSNALPLNDG REIKKETELL RQNPLRHFPP NSFLR

Best Arabidopsis Sequence Match ( AT2G33560.1 )
(BLAST)

001: MAAETKVQVS DPEAEFLNSK QETGYEWELF KENVRPLKRG RNVGILNHAL KSHSDHQLRK NLIEKRRNLI EAIDEYEGDD PLSPWIECIK WVQEAFPPGG
101: ECSGLLVIYE QCVRKFWHSE RYKDDLRYLK VWLEYAEHCA DAEVIYKFLE VNEIGKTHAV YYIAYALHIE FKNKVKTANE IFNLGISRDA KPVEKLNDAY
201: KKFMVRTMRR SNTADEEPKE NNDLPSRSFG TLLSRGDNNA RRQALGSSNP QAKKLKPNQS SKTPFAIYAD AVSDTTSGNQ PESDKSRPEF GSWLMLGGRA
301: ERNKENNSLP RKWASFKVPQ KPIVRTVAAA SASTFEVFVD EEECTEEEEE KKKNDETISS SSNVLPLNGG REIKKETELL RQNPLRHFPP NSFLR

Arabidopsis Description

BUBR1BUBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VU51]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.