CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27958	Canola	nucleus	64.22	51.67
CDY17186	Canola	nucleus	62.94	49.87
CDX95868	Canola	cytosol	22.04	48.25
AT2G33560.2	Thale cress	nucleus	55.59	43.94
CDY46599	Canola	cytosol	41.21	42.02
CDY61325	Canola	cytosol	46.96	39.41
Bra015240.1-P	Field mustard	nucleus	29.07	39.22
VIT_18s0122g00470.t01	Wine grape	nucleus	43.45	35.7
Solyc04g082900.2.1	Tomato	nucleus	42.17	33.93
PGSC0003DMT400025922	Potato	cytosol	41.85	33.85
KRH49504	Soybean	cytoskeleton, cytosol, nucleus	40.89	33.33
KRG89179	Soybean	cytosol	39.62	32.29
Zm00001d015863_P001	Maize	cytosol	36.1	29.2
Os02t0193600-01	Rice	nucleus	35.46	27.89
TraesCS6B01G195800.1	Wheat	cytosol	33.87	26.84
EES04683	Sorghum	cytosol	34.5	26.67
TraesCS6D01G157200.1	Wheat	cytosol, nucleus, plastid	32.59	25.89
TraesCS6A01G168100.1	Wheat	nucleus	32.59	25.63
GSMUA_Achr1P16590_001	Banana	nucleus	31.95	23.42
GSMUA_Achr3P11640_001	Banana	endoplasmic reticulum	32.27	22.1
HORVU6Hr1G034110.3	Barley	nucleus	25.88	19.76
CDX98847	Canola	nucleus	12.46	8.72
CDX70146	Canola	nucleus	12.46	8.61
CDX81974	Canola	cytosol	10.86	6.83
CDY13862	Canola	cytosol	10.86	6.81

Protein Annotations

EnsemblPlants:CDY23726	EnsemblPlantsGene:GSBRNA2T00024049001	Gene3D:1.25.40.430	GO:A0A078GED4	GO:GO:0007049	GO:GO:0007094
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:Bub1/Mad3	InterPro:IPR013212	InterPro:Mad3/Bub1_I
PANTHER:PTHR14030	PANTHER:PTHR14030:SF4	ProteinID:CDY23726	ProteinID:CDY23726.1	SEG:seg	SMART:SM00777
UniParc:UPI0004EDFAE6	UniProt:A0A078GED4	MapMan:13.3.5.5.5	:	:	:

Description

BnaC04g43960DBnaC04g43960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GED4]

Coordinates

chrLK032148:+:40172..42326

Molecular Weight (calculated)

35355.9 Da

IEP (calculated)

9.426

GRAVY (calculated)

-0.736

Length

313 amino acids

Sequence
(BLAST)

001: MAETRVEIPD PETEFFASKQ ETGHEWELFK ENVRPLKRGR NIRLLNHALK SHCDHQLRKT LIEKRRKLIE EIDEYDGGVS SGRIVLRAVG DIRAVREKVL
101: ALGAAEHCAG AEVIYKFLEV NVIGNTHALY YIDYGLHMDF TGKVKTANEI FNLRISRNTK PVEKLNEAYK KFMVRTMRRS KSVDDEPKEN ELPSRSFGTV
201: LSRGDNNNTG RQALGPQAKR TKPNHSSKAP LAVYKDTASG DQTESDKSKP EFASFKVPQK TIVRTAAASA SSFEVFVDEE KDCTESRVEK KESETISSSS
301: NILPLNDGRE IKK

Best Arabidopsis Sequence Match ( AT2G33560.1 )
(BLAST)

001: MAAETKVQVS DPEAEFLNSK QETGYEWELF KENVRPLKRG RNVGILNHAL KSHSDHQLRK NLIEKRRNLI EAIDEYEGDD PLSPWIECIK WVQEAFPPGG
101: ECSGLLVIYE QCVRKFWHSE RYKDDLRYLK VWLEYAEHCA DAEVIYKFLE VNEIGKTHAV YYIAYALHIE FKNKVKTANE IFNLGISRDA KPVEKLNDAY
201: KKFMVRTMRR SNTADEEPKE NNDLPSRSFG TLLSRGDNNA RRQALGSSNP QAKKLKPNQS SKTPFAIYAD AVSDTTSGNQ PESDKSRPEF GSWLMLGGRA
301: ERNKENNSLP RKWASFKVPQ KPIVRTVAAA SASTFEVFVD EEECTEEEEE KKKNDETISS SSNVLPLNGG REIKKETELL RQNPLRHFPP NSFLR

Arabidopsis Description

BUBR1BUBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VU51]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.