Factsheet for VIT_13s0067g01530.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00050.t01
VIT_01s0010g02430.t01	cytoskeleton, nucleus
VIT_13s0067g01530.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05510.1	VIT_00s0211g00050.t01	AT2G22640.1	25262777
AT5G05510.1	VIT_01s0010g02430.t01	AT3G25980.1	25262777
AT5G05510.1	VIT_01s0010g02430.t01	AT3G25980.1	25262777
AT5G05510.1	VIT_13s0067g01530.t01	AT5G05510.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009117.1-P	Field mustard	nucleus	42.64	56.95
CDX70146	Canola	nucleus	41.32	55.19
CDX98847	Canola	nucleus	40.0	54.14
KRH31175	Soybean	nucleus	45.95	52.85
AT5G05510.1	Thale cress	nucleus	40.33	51.8
KRG97697	Soybean	nucleus	44.46	51.53
Solyc06g051040.2.1	Tomato	cytosol, nucleus, plastid	47.27	48.64
GSMUA_Achr5P14270_001	Banana	cytosol	40.5	45.54
EES09179	Sorghum	nucleus	36.69	35.92
Os11t0128700-00	Rice	nucleus	36.03	35.1
Os12t0125300-01	Rice	nucleus	36.03	35.05
HORVU7Hr1G029580.3	Barley	nucleus	34.88	33.98
Zm00001d023279_P001	Maize	nucleus	35.21	33.28
TraesCS5A01G142400.1	Wheat	nucleus	34.05	33.23
TraesCSU01G188700.1	Wheat	nucleus	34.05	33.23
HORVU5Hr1G045460.1	Barley	mitochondrion	34.88	32.61
TraesCS5D01G149700.1	Wheat	plastid	34.38	31.56
TraesCS5B01G141100.1	Wheat	nucleus, plastid	34.05	31.21
EES16550	Sorghum	mitochondrion, nucleus	36.86	31.15
VIT_18s0122g00470.t01	Wine grape	nucleus	10.25	16.27
VIT_12s0028g03360.t01	Wine grape	nucleus	11.74	12.86

Protein Annotations

Gene3D:1.25.40.430	MapMan:13.3.5.5.5	InterPro:Bub1/Mad3	ProteinID:CCB49845	ProteinID:CCB49845.1	ncoils:Coil
UniProt:F6HC91	EMBL:FN595514	GO:GO:0000003	GO:GO:0000778	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006468	GO:GO:0007049	GO:GO:0007094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0051754	InterPro:IPR013212
InterPro:Mad3/Bub1_I	PFAM:PF08311	PFscan:PS51489	PANTHER:PTHR14030	PANTHER:PTHR14030:SF2	SMART:SM00777
UniParc:UPI0002107F08	ArrayExpress:VIT_13s0067g01530	EnsemblPlantsGene:VIT_13s0067g01530	EnsemblPlants:VIT_13s0067g01530.t01	SEG:seg	:

Description

No Description!

Coordinates

chr13:+:864892..868902

Molecular Weight (calculated)

69465.5 Da

IEP (calculated)

4.914

GRAVY (calculated)

-0.849

Length

605 amino acids

Sequence
(BLAST)

001: MANTLHGDLF SSLISDIKTY TGKDPLLPWL RGIRKMMESL PPQLLKEKLP RFLQKCAQTF ETDRRYTNDM RYLRVWLQLM DFVDDPRGLL RTMEINHIGE
101: KRALFYQAYA LYYEKIKKFE EADKMYHLGV QNLAEPLEEL QKSYEQFLHR LERHKNRRIQ RQEGRKTNKP PARVLTQHCG ETKENNENMQ RVERQHTGTW
201: PEESSPKTLH NHKSAETNNV SKESSHDAMP MEESNRVRLS EKLCDGGTDS IPSLKKEVIT NIEPVAYSNQ QEFTETKLDR PSTFCEDPLL VKFLDTAVVG
301: KSEAEDACHH GLVEPTINMK EAMNAINNMF REPLEPAMVG RATRRRPRVD NSLNNGFKVF VDENLDNESF NIFIDEEEAN GVGDRNDEKD HLEEESEVQD
401: GTEDSGVNVF VFPSPKDDPS ESSDNLHAEN SSRPKFREDT VVCRFVGSTI LDEPEVENVC HHGLVEPTIN LKEAMNDINN MFGKPIEFAR KRRPKKQDKV
501: PDTKRDFGGG FSILPDDDLE SQKGFSILPD NDLASQQGFS ILPDNDLASQ QGFSILPDDD LESQQGRSLP KSSHKSREFD LSEPTVFTKE AMDEINKMFG
601: MPLDF

Best Arabidopsis Sequence Match ( AT5G05510.1 )
(BLAST)

001: MAKNENGYEN LLASLIVDIK SYSGKDHLLP WIRGVKKMKE SLPSQILNEK LPRFLQKCAE SFESDKRYKN DSRYIRVWLQ LMDFVDDPRA LLRTMEAKSI
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F

Arabidopsis Description

At5g05510 [Source:UniProtKB/TrEMBL;Acc:Q9FFG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.