Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G196600.1 | |
| TraesCS2A01G320000.1 | cytoskeleton, nucleus |
| TraesCS2B01G224200.1 | |
| TraesCS2B01G363300.1 | cytoskeleton, nucleus |
| TraesCS2D01G204600.1 | |
| TraesCS2D01G343300.1 | cytoskeleton, nucleus |
| TraesCS5A01G142400.1 | |
| TraesCS5B01G141100.1 | |
| TraesCS5D01G149700.1 | |
| TraesCSU01G188700.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G188700.1 | Wheat | nucleus | 97.42 | 97.42 |
| HORVU7Hr1G029580.3 | Barley | nucleus | 94.35 | 94.2 |
| TraesCS5D01G149700.1 | Wheat | plastid | 97.58 | 91.81 |
| TraesCS5B01G141100.1 | Wheat | nucleus, plastid | 97.42 | 91.52 |
| HORVU5Hr1G045460.1 | Barley | mitochondrion | 94.35 | 90.42 |
| Os11t0128700-00 | Rice | nucleus | 67.42 | 67.31 |
| Os12t0125300-01 | Rice | nucleus | 66.77 | 66.56 |
| EES09179 | Sorghum | nucleus | 64.84 | 65.05 |
| Zm00001d023279_P001 | Maize | nucleus | 64.52 | 62.5 |
| EES16550 | Sorghum | mitochondrion, nucleus | 65.48 | 56.7 |
| Bra009117.1-P | Field mustard | nucleus | 32.74 | 44.81 |
| CDX70146 | Canola | nucleus | 31.61 | 43.27 |
| GSMUA_Achr5P14270_001 | Banana | cytosol | 37.1 | 42.75 |
| AT5G05510.1 | Thale cress | nucleus | 32.26 | 42.46 |
| CDX98847 | Canola | nucleus | 30.48 | 42.28 |
| KRH31175 | Soybean | nucleus | 33.23 | 39.16 |
| KRG97697 | Soybean | nucleus | 32.58 | 38.7 |
| Solyc06g051040.2.1 | Tomato | cytosol, nucleus, plastid | 34.35 | 36.22 |
| VIT_13s0067g01530.t01 | Wine grape | nucleus | 33.23 | 34.05 |
| TraesCS6A01G168100.1 | Wheat | nucleus | 10.48 | 16.33 |
| TraesCS2A01G226000.1 | Wheat | plastid | 9.03 | 10.14 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G142400.1 | EnsemblPlantsGene:TraesCS5A01G142400 | Gene3D:1.25.40.430 | GO:GO:0007049 | GO:GO:0007094 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | InterPro:Bub1/Mad3 | InterPro:IPR013212 | InterPro:Mad3/Bub1_I | PANTHER:PTHR14030 |
| PANTHER:PTHR14030:SF14 | PFAM:PF08311 | PFscan:PS51489 | SMART:SM00777 | MapMan:13.3.5.5.5 | : |
Description
No Description!
Coordinates
chr5A:+:315982358..315984860
Molecular Weight (calculated)
70153.5 Da
IEP (calculated)
6.852
GRAVY (calculated)
-0.857
Length
620 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAADHQHG HIDKEKEKEL LSSVVGDIRC YSGSDPLRPW LRGIRRLEGA LPPATLREKL PRFLQKCAEE FQDEPRYRDD PRYLRVWIQM MDYVKDAKPL
101: LKKLERNRIG LKRAAFYMAY AIYYEKRRRF QDAEQMYRVG IQNLAEPIEE LHKAHDQFIY RMELYQKRKD KEGMPSRVKP LPRCANQVDG QSRNYTELKS
201: NPVQKLGSSS NSSLCRHPPL GHAKDGVPSR GTSGDNKNLS RCNSDDTVVV RFVGSALVGK SETEDACHHG LVEPTINLKE AMDDINSMFL EPVEPETMLK
301: KRSKRDQPKF NQQASALHIF VDEEQLNSSD SNILHGKNTK SVHPKFSQQT SAFEIFVDED CPNATNQNVG QNRKSNKENN QQTNGFEIFV DENEPKGNDQ
401: NVMCHKNTRC PRPLHDSARQ QGTGDFQKPF VGGFAILADD EDEQCANNDD GVRINSRSMH PHNKLTMLHA EQADKETRHG EGENPLNFGL REDTIIRRFV
501: GSAVVDEPKV ENACHHGLVD PTINLKEAMS DINNMFGKPL NFQDGKKPNR KTNAVSERKA APVSGFSILA DDDISKDPAA KDKSSNSCTF GSESGLFEPT
601: ITTRDVMSEI NDMFGMSLDF
101: LKKLERNRIG LKRAAFYMAY AIYYEKRRRF QDAEQMYRVG IQNLAEPIEE LHKAHDQFIY RMELYQKRKD KEGMPSRVKP LPRCANQVDG QSRNYTELKS
201: NPVQKLGSSS NSSLCRHPPL GHAKDGVPSR GTSGDNKNLS RCNSDDTVVV RFVGSALVGK SETEDACHHG LVEPTINLKE AMDDINSMFL EPVEPETMLK
301: KRSKRDQPKF NQQASALHIF VDEEQLNSSD SNILHGKNTK SVHPKFSQQT SAFEIFVDED CPNATNQNVG QNRKSNKENN QQTNGFEIFV DENEPKGNDQ
401: NVMCHKNTRC PRPLHDSARQ QGTGDFQKPF VGGFAILADD EDEQCANNDD GVRINSRSMH PHNKLTMLHA EQADKETRHG EGENPLNFGL REDTIIRRFV
501: GSAVVDEPKV ENACHHGLVD PTINLKEAMS DINNMFGKPL NFQDGKKPNR KTNAVSERKA APVSGFSILA DDDISKDPAA KDKSSNSCTF GSESGLFEPT
601: ITTRDVMSEI NDMFGMSLDF
001: MAKNENGYEN LLASLIVDIK SYSGKDHLLP WIRGVKKMKE SLPSQILNEK LPRFLQKCAE SFESDKRYKN DSRYIRVWLQ LMDFVDDPRA LLRTMEAKSI
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F
Arabidopsis Description
At5g05510 [Source:UniProtKB/TrEMBL;Acc:Q9FFG4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.