CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97470	cytoskeleton, nucleus
KRG97697
KRH08024	cytoskeleton, nucleus
KRH31175
KRH31421	cytoskeleton, nucleus
KRH39504
KRH74448

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05510.1	KRH39504	AT2G22640.1	25262777
AT5G05510.1	KRH74448	AT2G22640.1	25262777
AT5G05510.1	KRG97470	AT3G25980.1	25262777
AT5G05510.1	KRH08024	AT3G25980.1	25262777
AT5G05510.1	KRH31421	AT3G25980.1	25262777
AT5G05510.1	KRG97470	AT3G25980.1	25262777
AT5G05510.1	KRH08024	AT3G25980.1	25262777
AT5G05510.1	KRH31421	AT3G25980.1	25262777
AT5G05510.1	KRG97697	AT5G05510.1	25262777
AT5G05510.1	KRH31175	AT5G05510.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97697	Soybean	nucleus	85.55	86.21
CDX70146	Canola	nucleus	49.05	56.95
Bra009117.1-P	Field mustard	nucleus	48.86	56.73
CDX98847	Canola	nucleus	47.53	55.93
AT5G05510.1	Thale cress	nucleus	46.39	51.8
VIT_13s0067g01530.t01	Wine grape	nucleus	52.85	45.95
Solyc06g051040.2.1	Tomato	cytosol, nucleus, plastid	49.05	43.88
GSMUA_Achr5P14270_001	Banana	cytosol	44.87	43.87
EES09179	Sorghum	nucleus	40.87	34.79
Os12t0125300-01	Rice	nucleus	40.68	34.41
Os11t0128700-00	Rice	nucleus	40.49	34.3
HORVU7Hr1G029580.3	Barley	nucleus	40.11	33.98
TraesCS5A01G142400.1	Wheat	nucleus	39.16	33.23
TraesCSU01G188700.1	Wheat	nucleus	38.59	32.74
HORVU5Hr1G045460.1	Barley	mitochondrion	40.11	32.61
Zm00001d023279_P001	Maize	nucleus	38.78	31.88
TraesCS5D01G149700.1	Wheat	plastid	39.35	31.41
TraesCS5B01G141100.1	Wheat	nucleus, plastid	38.59	30.76
EES16550	Sorghum	mitochondrion, nucleus	39.73	29.19
KRH49504	Soybean	cytoskeleton, cytosol, nucleus	11.98	16.41
KRG89179	Soybean	cytosol	11.6	15.89
KRH25625	Soybean	cytosol	13.31	13.18
KRH55929	Soybean	nucleus	12.93	12.85

Protein Annotations

Gene3D:1.25.40.430	EntrezGene:100806627	MapMan:13.3.5.5.5	EMBL:ACUP02007125	InterPro:Bub1/Mad3	ncoils:Coil
EnsemblPlantsGene:GLYMA_11G232000	GO:GO:0000003	GO:GO:0000778	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006468
GO:GO:0007049	GO:GO:0007094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0051754	InterPro:IPR013212	UniProt:K7LRS1
EnsemblPlants:KRH31175	ProteinID:KRH31175	ProteinID:KRH31175.1	InterPro:Mad3/Bub1_I	PFAM:PF08311	PFscan:PS51489
PANTHER:PTHR14030	PANTHER:PTHR14030:SF2	SMART:SM00777	UniParc:UPI000295443B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:+:32754820..32757451

Molecular Weight (calculated)

60023.0 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.820

Length

526 amino acids

Sequence
(BLAST)

001: MANVDELLSS LISDIHTYTG KDPLLPWLRA IRKVKDTLPP KTLKEKLPAF LQKCAHTFEL DRRYRNDMRY LRIWLHLMDF VDDPKTLLRT MEVNHIGTKR
101: CEFYQAYALY YEKSKKYDEA EKMYHLGVKN LAEPVDKLQK SYEQFLQRME RKNNKRIQHQ EAKGARRPLS TKSFPSLDNK TEGSKSNGAC CVEGGVQKGP
201: RIDNYAAKGV ADDKNVKTKK DERKRFHGDD TVVVKFVDTA MVGKSEAEDA CHHGLVDPTI NMKEAMNAIN SMFREPLETV PLGRKSHKNH PKEDPSTKNE
301: FEVFVDENMD HGIKPSGSLS LQNRTEASQP HPEPLQIYVD DEENSETSDV NVNLFEGSST SSASQPNGFV FLRPKDIPSE KSSDMDADIG RNSKFREDTV
401: VCRFVGSAIL DEPEVENVCH HGLVDPTINL KEAMDDINNM FGKPIDFVRR RRTTTKQEKA PQSNRGNDFG GFSILVDDEH PVQQVPQPPP PKLQEKSKES
501: DLFEPTMLTK EAIDDINKMF NMPLDF

Best Arabidopsis Sequence Match ( AT5G05510.1 )
(BLAST)

001: MAKNENGYEN LLASLIVDIK SYSGKDHLLP WIRGVKKMKE SLPSQILNEK LPRFLQKCAE SFESDKRYKN DSRYIRVWLQ LMDFVDDPRA LLRTMEAKSI
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F

Arabidopsis Description

At5g05510 [Source:UniProtKB/TrEMBL;Acc:Q9FFG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.