Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G196600.1 | |
| TraesCS2A01G320000.1 | cytoskeleton, nucleus |
| TraesCS2B01G224200.1 | |
| TraesCS2B01G363300.1 | cytoskeleton, nucleus |
| TraesCS2D01G204600.1 | |
| TraesCS2D01G343300.1 | cytoskeleton, nucleus |
| TraesCS5A01G142400.1 | |
| TraesCS5B01G141100.1 | |
| TraesCS5D01G149700.1 | |
| TraesCSU01G188700.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G188700.1 | Wheat | nucleus | 93.94 | 100.0 |
| TraesCS5A01G142400.1 | Wheat | nucleus | 91.52 | 97.42 |
| TraesCS5D01G149700.1 | Wheat | plastid | 96.06 | 96.21 |
| HORVU5Hr1G045460.1 | Barley | mitochondrion | 90.91 | 92.74 |
| HORVU7Hr1G029580.3 | Barley | nucleus | 87.12 | 92.59 |
| Os11t0128700-00 | Rice | nucleus | 62.42 | 66.34 |
| Os12t0125300-01 | Rice | nucleus | 61.82 | 65.59 |
| EES09179 | Sorghum | nucleus | 60.15 | 64.24 |
| Zm00001d023279_P001 | Maize | nucleus | 59.39 | 61.25 |
| EES16550 | Sorghum | mitochondrion, nucleus | 61.36 | 56.56 |
| Bra009117.1-P | Field mustard | nucleus | 30.76 | 44.81 |
| CDX70146 | Canola | nucleus | 29.7 | 43.27 |
| GSMUA_Achr5P14270_001 | Banana | cytosol | 34.85 | 42.75 |
| AT5G05510.1 | Thale cress | nucleus | 30.3 | 42.46 |
| CDX98847 | Canola | nucleus | 28.64 | 42.28 |
| KRH31175 | Soybean | nucleus | 30.76 | 38.59 |
| KRG97697 | Soybean | nucleus | 30.45 | 38.51 |
| Solyc06g051040.2.1 | Tomato | cytosol, nucleus, plastid | 31.97 | 35.88 |
| VIT_13s0067g01530.t01 | Wine grape | nucleus | 31.21 | 34.05 |
| TraesCS6B01G195800.1 | Wheat | cytosol | 9.85 | 16.46 |
| TraesCS2B01G249400.1 | Wheat | plastid | 8.94 | 10.69 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G141100.1 | EnsemblPlantsGene:TraesCS5B01G141100 | Gene3D:1.25.40.430 | GO:GO:0007049 | GO:GO:0007094 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | InterPro:Bub1/Mad3 | InterPro:IPR013212 | InterPro:Mad3/Bub1_I | PANTHER:PTHR14030 |
| PANTHER:PTHR14030:SF14 | PFAM:PF08311 | PFscan:PS51489 | SMART:SM00777 | MapMan:13.3.5.5.5 | : |
Description
No Description!
Coordinates
chr5B:+:266348680..266351299
Molecular Weight (calculated)
74525.9 Da
IEP (calculated)
7.141
GRAVY (calculated)
-0.788
Length
660 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVYAAEINK IAALISNPAS RRLLGCFSSR RRATDPTNTP MAAAADHQHG HIDKEKEKEL LSSVVGDIRC YSGSDPLRPW LRGIRRLEGA LPPATLREKL
101: PRFLQKCAEE FQDEPRYRDD PRYLRVWIQM MDYVKDAKPL LKKLETNRIG LKRAAFYMAY AIYYEKRRRF QDAEQMYRVG IQNLAEPIEE LHKSHDQFIY
201: RMELYQKRKD KEGMPNRVKP LPKCANQVDG QSRNYTELKS NPVQKLGSSS NSSLCRYPPL GHAKDGVPSR GTSGDNKNLS RCNSDDTAVV RFVGSALVGK
301: SETEDACHHG LVEPTINLKE AMDDINSMFL EPVEPETMLK KRLKRDQPKF NQQASALHIF VDEEQLNSSD SNTLHGKNTM SVHPKFSQQT SAFEIFVDED
401: CPNATNQNVG QNRKSNKENN QQTSGFEFFV DENEPKGNDQ NVMCHKNTRC PRPLHDSARQ QGMGDFQKLF VGGFAILADD EDEQCANNDD GVRINSRSMH
501: PHNKLTMLHA EQADKETRHG EGEIPLNFGL REDTIIRRFV GSAVVDEPKV ENACHHGLVD PTINLKEAMS DINNMFGKPL NFQDGKKPNR KTNAVSERKA
601: APVSGFSILA DDDISKDPAA KDKSSNSCTF GSESGLFEPT ITTRNVMSEI NEMFGMSLDF
101: PRFLQKCAEE FQDEPRYRDD PRYLRVWIQM MDYVKDAKPL LKKLETNRIG LKRAAFYMAY AIYYEKRRRF QDAEQMYRVG IQNLAEPIEE LHKSHDQFIY
201: RMELYQKRKD KEGMPNRVKP LPKCANQVDG QSRNYTELKS NPVQKLGSSS NSSLCRYPPL GHAKDGVPSR GTSGDNKNLS RCNSDDTAVV RFVGSALVGK
301: SETEDACHHG LVEPTINLKE AMDDINSMFL EPVEPETMLK KRLKRDQPKF NQQASALHIF VDEEQLNSSD SNTLHGKNTM SVHPKFSQQT SAFEIFVDED
401: CPNATNQNVG QNRKSNKENN QQTSGFEFFV DENEPKGNDQ NVMCHKNTRC PRPLHDSARQ QGMGDFQKLF VGGFAILADD EDEQCANNDD GVRINSRSMH
501: PHNKLTMLHA EQADKETRHG EGEIPLNFGL REDTIIRRFV GSAVVDEPKV ENACHHGLVD PTINLKEAMS DINNMFGKPL NFQDGKKPNR KTNAVSERKA
601: APVSGFSILA DDDISKDPAA KDKSSNSCTF GSESGLFEPT ITTRNVMSEI NEMFGMSLDF
001: MAKNENGYEN LLASLIVDIK SYSGKDHLLP WIRGVKKMKE SLPSQILNEK LPRFLQKCAE SFESDKRYKN DSRYIRVWLQ LMDFVDDPRA LLRTMEAKSI
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F
Arabidopsis Description
At5g05510 [Source:UniProtKB/TrEMBL;Acc:Q9FFG4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.