Factsheet for VIT_01s0010g02430.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00050.t01
VIT_00s0282g00010.t01
VIT_00s0670g00010.t01
VIT_00s0787g00010.t01
VIT_00s1008g00010.t01
VIT_00s1384g00010.t01
VIT_01s0010g02430.t01
VIT_01s0011g01490.t01
VIT_02s0012g01330.t01
VIT_02s0012g02600.t01
VIT_02s0025g03690.t01
VIT_02s0087g00770.t01
VIT_03s0017g00150.t01
VIT_03s0017g02320.t01
VIT_03s0038g03100.t01
VIT_04s0008g04510.t01
VIT_05s0020g04950.t01
VIT_07s0005g03000.t01
VIT_07s0104g00080.t01
VIT_08s0007g02900.t01
VIT_08s0007g03280.t01
VIT_09s0002g04480.t01
VIT_11s0016g00850.t01
VIT_12s0057g00240.t01
VIT_13s0067g01530.t01
VIT_13s0084g00620.t01
VIT_17s0000g03920.t01
VIT_17s0000g06670.t01
VIT_17s0000g08810.t01
VIT_18s0001g13560.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25980.1	VIT_03s0017g02320.t01	AT1G24290.1	20706207
AT3G25980.1	VIT_17s0000g06670.t01	AT1G26630.1	20706207
AT3G25980.1	VIT_05s0020g04950.t01	AT1G56290.1	20706207
AT3G25980.1	VIT_00s0787g00010.t01	AT1G62390.1	20706207
AT3G25980.1	VIT_00s1008g00010.t01	AT1G62390.1	20706207
AT3G25980.1	VIT_00s1384g00010.t01	AT1G62390.1	20706207
AT3G25980.1	VIT_02s0012g02600.t01	AT1G62390.1	20706207
AT3G25980.1	VIT_17s0000g03920.t01	AT1G62390.1	20706207
AT3G25980.1	VIT_07s0104g00080.t01	AT2G17350.1	20706207
AT3G25980.1	VIT_00s0211g00050.t01	AT2G22640.1	25262777
AT3G25980.1	VIT_01s0011g01490.t01	AT2G35050.1	20706207
AT3G25980.1	VIT_08s0007g02900.t01	AT2G36130.1	20706207
AT3G25980.1	VIT_08s0007g03280.t01	AT2G36230.1	20706207
AT3G25980.1	VIT_13s0084g00620.t01	AT2G38730.1	20706207
AT3G25980.1	VIT_03s0017g00150.t01	AT3G11270.1	20706207
AT3G25980.1	VIT_07s0005g03000.t01	AT3G11270.1	20706207
AT3G25980.1	VIT_00s0670g00010.t01	AT3G11830.1	20706207
AT3G25980.1	VIT_09s0002g04480.t01	AT3G16060.1	20706207
AT3G25980.1	VIT_01s0010g02430.t01	AT3G25980.1	25262777
AT3G25980.1	VIT_18s0001g13560.t01	AT3G49990.1	20706207
AT3G25980.1	VIT_00s0282g00010.t01	AT4G04800.1	20706207
AT3G25980.1	VIT_02s0087g00770.t01	AT4G19210.1	20706207
AT3G25980.1	VIT_00s0282g00010.t01	AT4G21860.1	20706207
AT3G25980.1	VIT_17s0000g08810.t01	AT4G24680.1	20706207
AT3G25980.1	VIT_12s0057g00240.t01	AT4G28230.1	20706207
AT3G25980.1	VIT_04s0008g04510.t01	AT4G32650.1	20706207
AT3G25980.1	VIT_11s0016g00850.t01	AT4G35740.1	20706207
AT3G25980.1	VIT_03s0038g03100.t01	AT4G38440.1	20706207
AT3G25980.1	VIT_13s0067g01530.t01	AT5G05510.1	25262777
AT3G25980.1	VIT_02s0025g03690.t01	AT5G41190.1	20706207
AT3G25980.1	VIT_02s0012g01330.t01	AT5G46750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97470	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	92.75	92.75
KRH31421	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	92.75	92.75
GSMUA_Achr6P21190_001	Banana	cytosol, nucleus, plastid	36.72	91.57
PGSC0003DMT400045025	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	91.79	91.35
Solyc05g014370.2.1	Tomato	mitochondrion	91.3	90.87
Bra017340.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	89.86	89.0
CDY04187	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	89.86	89.0
CDY39177	Canola	cytosol	89.86	89.0
Os04t0486500-01	Rice	mitochondrion	87.44	87.44
AT3G25980.1	Thale cress	cytosol	87.92	87.08
EES12410	Sorghum	mitochondrion	85.99	85.99
TraesCS2B01G363300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	83.57	83.57
TraesCS2A01G320000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	83.09	83.09
TraesCS2D01G343300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	82.61	82.61
CDX83576	Canola	extracellular, golgi	54.59	80.71
Zm00001d025721_P001	Maize	mitochondrion	82.13	79.07
KRH08024	Soybean	cytosol	39.13	75.7
Bra025176.1-P	Field mustard	cytosol	31.88	69.47
HORVU2Hr1G084050.1	Barley	plastid	83.57	63.6
Zm00001d003249_P001	Maize	mitochondrion	73.91	32.14

Protein Annotations

EntrezGene:100254488	wikigene:100254488	MapMan:13.3.5.5.4	Gene3D:3.30.900.10	ProteinID:CBI27546	ProteinID:CBI27546.3
UniProt:D7TAM3	EMBL:FN595754	GO:GO:0005575	GO:GO:0007049	GO:GO:0007094	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	InterPro:HORMA_dom	InterPro:HORMA_dom_sf
InterPro:IPR003511	InterPro:IPR036570	EntrezGene:LOC100254488	wikigene:LOC100254488	InterPro:Mad2	PFAM:PF02301
PFscan:PS50815	PANTHER:PTHR11842	PANTHER:PTHR11842:SF11	SUPFAM:SSF56019	TIGR:TC65567	UniParc:UPI00015CB867
ArrayExpress:VIT_01s0010g02430	EnsemblPlantsGene:VIT_01s0010g02430	EnsemblPlants:VIT_01s0010g02430.t01	unigene:Vvi.8704	RefSeq:XP_002270903	RefSeq:XP_002270903.1
RefSeq:XP_003631350	RefSeq:XP_003631350.1	:	:	:	:

Description

No Description!

Coordinates

chr1:-:19509377..19511747

Molecular Weight (calculated)

23414.9 Da

IEP (calculated)

4.502

GRAVY (calculated)

-0.172

Length

207 amino acids

Sequence
(BLAST)

001: MASRTATKDI ITLRGSAAIV SEFFGYAANS ILYNRGVYPE ESFGKVKKYG LPMLLTQDEG VKSFIANLTA QLSEWLETGK LQRVVLVIMS KATNEVLERW
101: NFSIETDGEV VENGVSREKS DKEIMREIQA IMRQIASSIT YLPCIDEPCV FDVLAYTDTD VAVPFTWIES DPKLIANPQM VKLHSFDTKI HKVDTLVSYK
201: NDEWDED

Best Arabidopsis Sequence Match ( AT3G25980.1 )
(BLAST)

001: MASKTAAAKD IITLHGSAAI VSEFFCYAAN SILYNRAVYP EESFVKVKKY GLPMLLIEDE SVKSFMSNLT SQISEWLEAG KLQRVVLVIM SKATGEVLER
101: WNFRIETDNE VVDKGVSREK SDKEIMREIQ AIMRQVASSV TYLPCLDETC VFDVLAYTDT DVAVPFTWIE SDPKLIANPQ MVKLHGFDTK IHKVDTLVSY
201: KNDEWDEEE

Arabidopsis Description

MAD2Mitotic spindle checkpoint protein MAD2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU93]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.