Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0005g01100.t01 | |
| VIT_09s0002g07160.t01 | |
| VIT_15s0045g01190.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G17350.1 | VIT_07s0005g01100.t01 | AT4G02150.1 | 21798944 |
| AT2G17350.1 | VIT_09s0002g07160.t01 | AT5G65940.1 | 21798944 |
| AT2G17350.1 | VIT_15s0045g01190.t01 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g065200.2.1 | Tomato | cytosol | 98.88 | 75.21 |
| PGSC0003DMT400067151 | Potato | cytosol | 98.88 | 75.21 |
| Bra002050.1-P | Field mustard | cytosol | 96.63 | 73.5 |
| Bra009650.1-P | Field mustard | cytosol | 96.63 | 73.5 |
| CDX87994 | Canola | cytosol | 96.63 | 73.5 |
| CDY07860 | Canola | cytosol | 96.63 | 73.5 |
| TraesCS7D01G246800.1 | Wheat | cytosol | 96.63 | 73.5 |
| CDY66480 | Canola | cytosol | 96.63 | 73.5 |
| TraesCS7B01G143500.1 | Wheat | cytosol | 96.63 | 73.5 |
| GSMUA_Achr5P23830_001 | Banana | cytosol | 96.63 | 73.5 |
| TraesCS7A01G248000.1 | Wheat | cytosol | 96.63 | 73.5 |
| AT2G17350.1 | Thale cress | cytosol | 96.63 | 73.5 |
| OQU89695 | Sorghum | cytosol | 96.63 | 73.5 |
| Os09t0491692-01 | Rice | cytosol | 96.63 | 73.5 |
| KRH45717 | Soybean | cytosol | 95.51 | 72.65 |
| KRG99297 | Soybean | cytosol | 95.51 | 72.65 |
| CDY50203 | Canola | cytosol | 95.51 | 72.65 |
| Os08t0511800-01 | Rice | cytosol | 94.38 | 71.79 |
| EES14256 | Sorghum | cytosol | 91.01 | 69.23 |
| TraesCS5B01G332700.1 | Wheat | cytosol | 34.83 | 40.79 |
| HORVU5Hr1G073560.2 | Barley | cytosol | 47.19 | 34.71 |
| Zm00001d006032_P001 | Maize | cytosol | 39.33 | 28.23 |
Protein Annotations
| ArrayExpress:VIT_07s0104g00080 | EMBL:AM436565 | EMBL:FN596005 | EnsemblPlants:VIT_07s0104g00080.t01 | EnsemblPlantsGene:VIT_07s0104g00080 | EntrezGene:100245962 |
| EntrezGene:LOC100245962 | ncoils:Coil | PANTHER:PTHR35715 | PANTHER:PTHR35715:SF3 | ProteinID:CAN62847 | ProteinID:CAN62847.1 |
| ProteinID:CBI32370 | ProteinID:CBI32370.3 | RefSeq:XP_002277553 | RefSeq:XP_002277553.1 | SEG:seg | unigene:Vvi.18283 |
| UniParc:UPI0001BE3A68 | UniProt:D7TPE7 | wikigene:100245962 | wikigene:LOC100245962 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr7:+:1383125..1386590
Molecular Weight (calculated)
10465.4 Da
IEP (calculated)
6.810
GRAVY (calculated)
-1.202
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MKEREMQSYI EEREREVAER EAAWKAELSR REAEIARQEA RLKMEKENLE KEKSVLMGTA SNQDNQDGAL EITVSGEKYR CLRFAKAKK
001: MSLRIKLVVD KFVEELKQAL DADIQDRIMK EREMQSYIEE REREVAEREA AWKAELSRRE TEIARQEARL KMERENLEKE KSVLMGTASN QDNQDGALEI
101: TVSGEKYRCL RFSKAKK
101: TVSGEKYRCL RFSKAKK
Arabidopsis Description
At2g17350 [Source:UniProtKB/TrEMBL;Acc:Q8L8N3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.