CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91893
KXG29172
KXG32187
OQU84058

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17350.1	KXG32187	AT4G02150.1	21798944
AT2G17350.1	EER91893	AT5G65940.1	21798944
AT2G17350.1	KXG29172	AT5G65940.1	21798944
AT2G17350.1	OQU84058	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0491692-01	Rice	cytosol	97.44	97.44
VIT_07s0104g00080.t01	Wine grape	cytosol, mitochondrion, nucleus	73.5	96.63
GSMUA_Achr5P23830_001	Banana	cytosol	94.02	94.02
Solyc06g065200.2.1	Tomato	cytosol	93.16	93.16
PGSC0003DMT400067151	Potato	cytosol	93.16	93.16
CDY50203	Canola	cytosol	92.31	92.31
Bra002050.1-P	Field mustard	cytosol	91.45	91.45
KRH45717	Soybean	cytosol	91.45	91.45
KRG99297	Soybean	cytosol	91.45	91.45
EES14256	Sorghum	cytosol	91.45	91.45
CDY66480	Canola	cytosol	91.45	91.45
CDY07860	Canola	cytosol	91.45	91.45
CDX87994	Canola	cytosol	91.45	91.45
Bra009650.1-P	Field mustard	cytosol	91.45	91.45
AT2G17350.1	Thale cress	cytosol	91.45	91.45
HORVU5Hr1G073560.2	Barley	cytosol	58.12	56.2
Zm00001d006032_P001	Maize	cytosol	51.28	48.39

Protein Annotations

EnsemblPlants:OQU89695	EnsemblPlantsGene:SORBI_3002G248900	EntrezGene:8064858	ncoils:Coil	PANTHER:PTHR35715	PANTHER:PTHR35715:SF3
ProteinID:EER99098.1	ProteinID:OQU89695	ProteinID:OQU89695.1	RefSeq:XP_002462577.1	SEG:seg	UniParc:UPI0001A8428F
UniProt:C5X4G5	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:63628278..63630695

Molecular Weight (calculated)

13695.3 Da

IEP (calculated)

5.464

GRAVY (calculated)

-0.932

Length

117 amino acids

Sequence
(BLAST)

001: MSVRIKAVVD RFVKELQEAL DADIQDRIMK EREMQSYIEE REREVAEREA AWKAELSRRE AEIARQEARL KMEKENLEKE KSVLMGTASS QDNQDGALEI
101: TVSGEKYRCL RFSKAKK

Best Arabidopsis Sequence Match ( AT2G17350.1 )
(BLAST)

001: MSLRIKLVVD KFVEELKQAL DADIQDRIMK EREMQSYIEE REREVAEREA AWKAELSRRE TEIARQEARL KMERENLEKE KSVLMGTASN QDNQDGALEI
101: TVSGEKYRCL RFSKAKK

Arabidopsis Description

At2g17350 [Source:UniProtKB/TrEMBL;Acc:Q8L8N3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.