Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0253300-01 | |
| Os12t0264500-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G17350.1 | Os01t0253300-01 | AT4G02150.1 | 21798944 |
| AT2G17350.1 | Os12t0264500-02 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU89695 | Sorghum | cytosol | 97.44 | 97.44 |
| VIT_07s0104g00080.t01 | Wine grape | cytosol, mitochondrion, nucleus | 73.5 | 96.63 |
| Os08t0511800-01 | Rice | cytosol | 94.87 | 94.87 |
| GSMUA_Achr5P23830_001 | Banana | cytosol | 93.16 | 93.16 |
| PGSC0003DMT400067151 | Potato | cytosol | 92.31 | 92.31 |
| Solyc06g065200.2.1 | Tomato | cytosol | 92.31 | 92.31 |
| Bra002050.1-P | Field mustard | cytosol | 90.6 | 90.6 |
| Bra009650.1-P | Field mustard | cytosol | 90.6 | 90.6 |
| CDX87994 | Canola | cytosol | 90.6 | 90.6 |
| CDY07860 | Canola | cytosol | 90.6 | 90.6 |
| CDY66480 | Canola | cytosol | 90.6 | 90.6 |
| AT2G17350.1 | Thale cress | cytosol | 90.6 | 90.6 |
| KRG99297 | Soybean | cytosol | 90.6 | 90.6 |
| KRH45717 | Soybean | cytosol | 90.6 | 90.6 |
| CDY50203 | Canola | cytosol | 89.74 | 89.74 |
| HORVU5Hr1G073560.2 | Barley | cytosol | 58.12 | 56.2 |
| Zm00001d006032_P001 | Maize | cytosol | 49.57 | 46.77 |
Protein Annotations
| EMBL:AK111478 | EnsemblPlants:Os09t0491692-01 | EnsemblPlantsGene:Os09g0491692 | EntrezGene:9267449 | ncoils:Coil | PANTHER:PTHR35715 |
| PANTHER:PTHR35715:SF3 | ProteinID:BAH94642.1 | ProteinID:BAT08743.1 | ProteinID:EEE69958.1 | RefSeq:XP_015610726.1 | SEG:seg |
| UniParc:UPI000188AF3C | UniProt:B7F3S5 | MapMan:35.2 | : | : | : |
Description
Lambda repressor-like, DNA-binding domain containing protein. (Os09t0491692-01)
Coordinates
chr9:-:18962153..18963967
Molecular Weight (calculated)
13707.4 Da
IEP (calculated)
6.845
GRAVY (calculated)
-0.957
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVRIKAVVD RFVKELQEAL DADIQDRVMK EREMQSYIQE REREVAEREA AWKAELSRRE AEIARQEARL KMEKENLEKE KSVLMGTASN QDNQDGALEI
101: TVSGEKYRCL RFSKAKK
101: TVSGEKYRCL RFSKAKK
001: MSLRIKLVVD KFVEELKQAL DADIQDRIMK EREMQSYIEE REREVAEREA AWKAELSRRE TEIARQEARL KMERENLEKE KSVLMGTASN QDNQDGALEI
101: TVSGEKYRCL RFSKAKK
101: TVSGEKYRCL RFSKAKK
Arabidopsis Description
At2g17350 [Source:UniProtKB/TrEMBL;Acc:Q8L8N3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.