Factsheet for GSMUA_Achr5P23830_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P13870_001
GSMUA_Achr5P13890_001
GSMUA_Achr5P13900_001
GSMUA_Achr8P14800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17350.1	GSMUA_Achr5P13870_001	AT5G65940.1	21798944
AT2G17350.1	GSMUA_Achr5P13890_001	AT5G65940.1	21798944
AT2G17350.1	GSMUA_Achr5P13900_001	AT5G65940.1	21798944
AT2G17350.1	GSMUA_Achr8P14800_001	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g065200.2.1	Tomato	cytosol	97.44	97.44
PGSC0003DMT400067151	Potato	cytosol	97.44	97.44
VIT_07s0104g00080.t01	Wine grape	cytosol, mitochondrion, nucleus	73.5	96.63
Bra002050.1-P	Field mustard	cytosol	95.73	95.73
Bra009650.1-P	Field mustard	cytosol	95.73	95.73
CDX87994	Canola	cytosol	95.73	95.73
CDY07860	Canola	cytosol	95.73	95.73
CDY66480	Canola	cytosol	95.73	95.73
TraesCS7D01G246800.1	Wheat	cytosol	95.73	95.73
TraesCS7B01G143500.1	Wheat	cytosol	95.73	95.73
TraesCS7A01G248000.1	Wheat	cytosol	95.73	95.73
AT2G17350.1	Thale cress	cytosol	95.73	95.73
Os08t0511800-01	Rice	cytosol	95.73	95.73
CDY50203	Canola	cytosol	94.87	94.87
KRH45717	Soybean	cytosol	94.02	94.02
OQU89695	Sorghum	cytosol	94.02	94.02
KRG99297	Soybean	cytosol	94.02	94.02
GSMUA_Achr10P...	Banana	cytosol	94.02	94.02
Os09t0491692-01	Rice	cytosol	93.16	93.16
EES14256	Sorghum	cytosol	93.16	93.16
TraesCS5B01G332700.1	Wheat	cytosol	45.3	69.74
HORVU5Hr1G073560.2	Barley	cytosol	56.41	54.55
Zm00001d006032_P001	Maize	cytosol	49.57	46.77

Protein Annotations

EnsemblPlants:GSMUA_Achr5P23830_001	EnsemblPlants:GSMUA_Achr5T23830_001	EnsemblPlantsGene:GSMUA_Achr5G23830_001	ncoils:Coil	PANTHER:PTHR35715	SEG:seg
UniParc:UPI0002964FC1	UniProt:M0T158	MapMan:35.2	:	:	:

Description

Putative Protein split ends [Source:GMGC_GENE;Acc:GSMUA_Achr5G23830_001]

Coordinates

chr5:+:25429508..25431765

Molecular Weight (calculated)

13718.4 Da

IEP (calculated)

6.854

GRAVY (calculated)

-0.945

Length

117 amino acids

Sequence
(BLAST)

001: MSLRIKAVVD KFVKELKEAL DADIQDRIMK EREMQSYIEE REREVAEREA AWKAELSRRE AEIARQEARL KLERENLEKE KSVLMGTASN QDNQDGALEI
101: TVSGEKYRCL RFSKAKK

Best Arabidopsis Sequence Match ( AT2G17350.1 )
(BLAST)

001: MSLRIKLVVD KFVEELKQAL DADIQDRIMK EREMQSYIEE REREVAEREA AWKAELSRRE TEIARQEARL KMERENLEKE KSVLMGTASN QDNQDGALEI
101: TVSGEKYRCL RFSKAKK

Arabidopsis Description

At2g17350 [Source:UniProtKB/TrEMBL;Acc:Q8L8N3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.