Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G073560.2 | Barley | cytosol | 73.68 | 46.28 |
| GSMUA_Achr5P23830_001 | Banana | cytosol | 69.74 | 45.3 |
| PGSC0003DMT400067151 | Potato | cytosol | 68.42 | 44.44 |
| Solyc06g065200.2.1 | Tomato | cytosol | 68.42 | 44.44 |
| TraesCS7B01G143500.1 | Wheat | cytosol | 68.42 | 44.44 |
| AT2G17350.1 | Thale cress | cytosol | 67.11 | 43.59 |
| Bra002050.1-P | Field mustard | cytosol | 67.11 | 43.59 |
| Bra009650.1-P | Field mustard | cytosol | 67.11 | 43.59 |
| CDX87994 | Canola | cytosol | 67.11 | 43.59 |
| CDY07860 | Canola | cytosol | 67.11 | 43.59 |
| CDY50203 | Canola | cytosol | 67.11 | 43.59 |
| CDY66480 | Canola | cytosol | 67.11 | 43.59 |
| KRG99297 | Soybean | cytosol | 67.11 | 43.59 |
| KRH45717 | Soybean | cytosol | 67.11 | 43.59 |
| Zm00001d006032_P001 | Maize | cytosol | 65.79 | 40.32 |
| VIT_07s0104g00080.t01 | Wine grape | cytosol, mitochondrion, nucleus | 40.79 | 34.83 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G332700.1 | EnsemblPlantsGene:TraesCS5B01G332700 | PANTHER:PTHR35715 | PANTHER:PTHR35715:SF3 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr5B:-:516605374..516605604
Molecular Weight (calculated)
8812.5 Da
IEP (calculated)
4.195
GRAVY (calculated)
-0.261
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MSVWIKAVVD MFVKELQGAL DADIQDLIMK EQEIQSYIQE REREVAEREA AWKAELSTRE VVIQPPYSSL SPFPPF
001: MSLRIKLVVD KFVEELKQAL DADIQDRIMK EREMQSYIEE REREVAEREA AWKAELSRRE TEIARQEARL KMERENLEKE KSVLMGTASN QDNQDGALEI
101: TVSGEKYRCL RFSKAKK
101: TVSGEKYRCL RFSKAKK
Arabidopsis Description
At2g17350 [Source:UniProtKB/TrEMBL;Acc:Q8L8N3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.