Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G049960.6 | |
| HORVU3Hr1G034750.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G17350.1 | HORVU3Hr1G034750.5 | AT4G02150.1 | 21798944 |
| AT2G17350.1 | HORVU1Hr1G049960.6 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G332700.1 | Wheat | cytosol | 46.28 | 73.68 |
| Os09t0491692-01 | Rice | cytosol | 56.2 | 58.12 |
| OQU89695 | Sorghum | cytosol | 56.2 | 58.12 |
| Os08t0511800-01 | Rice | cytosol | 55.37 | 57.27 |
| TraesCS7D01G246800.1 | Wheat | cytosol | 54.55 | 56.41 |
| TraesCS7A01G248000.1 | Wheat | cytosol | 54.55 | 56.41 |
| Solyc06g065200.2.1 | Tomato | cytosol | 54.55 | 56.41 |
| PGSC0003DMT400067151 | Potato | cytosol | 54.55 | 56.41 |
| GSMUA_Achr5P23830_001 | Banana | cytosol | 54.55 | 56.41 |
| KRG99297 | Soybean | cytosol | 53.72 | 55.56 |
| KRH45717 | Soybean | cytosol | 53.72 | 55.56 |
| Bra002050.1-P | Field mustard | cytosol | 52.07 | 53.85 |
| CDY66480 | Canola | cytosol | 52.07 | 53.85 |
| CDY50203 | Canola | cytosol | 52.07 | 53.85 |
| CDY07860 | Canola | cytosol | 52.07 | 53.85 |
| CDX87994 | Canola | cytosol | 52.07 | 53.85 |
| Bra009650.1-P | Field mustard | cytosol | 52.07 | 53.85 |
| AT2G17350.1 | Thale cress | cytosol | 52.07 | 53.85 |
| EES14256 | Sorghum | cytosol | 51.24 | 52.99 |
| Zm00001d006032_P001 | Maize | cytosol | 48.76 | 47.58 |
| VIT_07s0104g00080.t01 | Wine grape | cytosol, mitochondrion, nucleus | 34.71 | 47.19 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G073560.2 | EnsemblPlantsGene:HORVU5Hr1G073560 | PANTHER:PTHR35715 | PANTHER:PTHR35715:SF3 | SEG:seg | UniParc:UPI000B4677B2 |
| UniProt:A0A287RSI7 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:540124730..540127445
Molecular Weight (calculated)
13575.2 Da
IEP (calculated)
4.533
GRAVY (calculated)
-0.186
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVRIKAVVD RFVKELQEAL DADIQDRIMK EREMQSYIQE REREVAEREA AWKAELSRRE VEIQPPLLSV SFPAVPIHLR AYSLVAGAES IGGGVDGTMP
101: WEVGSSSDIV LLNAGAFQIY Q
101: WEVGSSSDIV LLNAGAFQIY Q
001: MSLRIKLVVD KFVEELKQAL DADIQDRIMK EREMQSYIEE REREVAEREA AWKAELSRRE TEIARQEARL KMERENLEKE KSVLMGTASN QDNQDGALEI
101: TVSGEKYRCL RFSKAKK
101: TVSGEKYRCL RFSKAKK
Arabidopsis Description
At2g17350 [Source:UniProtKB/TrEMBL;Acc:Q8L8N3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.