Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g065200.2.1 | Tomato | cytosol | 100.0 | 100.0 |
| VIT_07s0104g00080.t01 | Wine grape | cytosol, mitochondrion, nucleus | 75.21 | 98.88 |
| GSMUA_Achr5P23830_001 | Banana | cytosol | 97.44 | 97.44 |
| KRH45717 | Soybean | cytosol | 96.58 | 96.58 |
| KRG99297 | Soybean | cytosol | 96.58 | 96.58 |
| Bra002050.1-P | Field mustard | cytosol | 95.73 | 95.73 |
| CDY66480 | Canola | cytosol | 95.73 | 95.73 |
| CDY07860 | Canola | cytosol | 95.73 | 95.73 |
| CDX87994 | Canola | cytosol | 95.73 | 95.73 |
| Bra009650.1-P | Field mustard | cytosol | 95.73 | 95.73 |
| AT2G17350.1 | Thale cress | cytosol | 95.73 | 95.73 |
| CDY50203 | Canola | cytosol | 94.87 | 94.87 |
| TraesCS7A01G248000.1 | Wheat | cytosol | 94.87 | 94.87 |
| TraesCS7B01G143500.1 | Wheat | cytosol | 94.87 | 94.87 |
| TraesCS7D01G246800.1 | Wheat | cytosol | 94.87 | 94.87 |
| Os08t0511800-01 | Rice | cytosol | 94.02 | 94.02 |
| OQU89695 | Sorghum | cytosol | 93.16 | 93.16 |
| EES14256 | Sorghum | cytosol | 92.31 | 92.31 |
| Os09t0491692-01 | Rice | cytosol | 92.31 | 92.31 |
| TraesCS5B01G332700.1 | Wheat | cytosol | 44.44 | 68.42 |
| HORVU5Hr1G073560.2 | Barley | cytosol | 56.41 | 54.55 |
| Zm00001d006032_P001 | Maize | cytosol | 48.72 | 45.97 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400067151 | EnsemblPlantsGene:PGSC0003DMG400026106 | EntrezGene:102589566 | ncoils:Coil | PANTHER:PTHR35715 | PGSC:PGSC0003DMG400026106 |
| RefSeq:XP_006353609.1 | SEG:seg | UniParc:UPI00027672B0 | UniProt:M1CGS6 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026106]
Coordinates
chr6:+:46672971..46677789
Molecular Weight (calculated)
13720.4 Da
IEP (calculated)
5.464
GRAVY (calculated)
-0.936
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLRIKAVVD KFVQELKEAL DADIQDRIMK EREMQSYIEE REREVAEREA AWKAELSRRE AEIARQEARL KMERENLEKE KSVLMGTASN QDNQDGALEI
101: TVSGEKYRCL RFAKAKK
101: TVSGEKYRCL RFAKAKK
001: MSLRIKLVVD KFVEELKQAL DADIQDRIMK EREMQSYIEE REREVAEREA AWKAELSRRE TEIARQEARL KMERENLEKE KSVLMGTASN QDNQDGALEI
101: TVSGEKYRCL RFSKAKK
101: TVSGEKYRCL RFSKAKK
Arabidopsis Description
At2g17350 [Source:UniProtKB/TrEMBL;Acc:Q8L8N3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.