CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009650.1-P	Field mustard	cytosol	100.0	100.0
CDY07860	Canola	cytosol	99.15	99.15
CDY66480	Canola	cytosol	99.15	99.15
CDY50203	Canola	cytosol	98.29	98.29
VIT_07s0104g00080.t01	Wine grape	cytosol, mitochondrion, nucleus	73.5	96.63
GSMUA_Achr5P23830_001	Banana	cytosol	95.73	95.73
Solyc06g065200.2.1	Tomato	cytosol	95.73	95.73
PGSC0003DMT400067151	Potato	cytosol	95.73	95.73
TraesCS7D01G246800.1	Wheat	cytosol	93.16	93.16
TraesCS7B01G143500.1	Wheat	cytosol	93.16	93.16
TraesCS7A01G248000.1	Wheat	cytosol	93.16	93.16
Os08t0511800-01	Rice	cytosol	92.31	92.31
KRH45717	Soybean	cytosol	92.31	92.31
KRG99297	Soybean	cytosol	92.31	92.31
OQU89695	Sorghum	cytosol	91.45	91.45
Os09t0491692-01	Rice	cytosol	90.6	90.6
EES14256	Sorghum	cytosol	90.6	90.6
TraesCS5B01G332700.1	Wheat	cytosol	43.59	67.11
HORVU5Hr1G073560.2	Barley	cytosol	53.85	52.07
Zm00001d006032_P001	Maize	cytosol	47.01	44.35

Protein Annotations

EnsemblPlants:CDX87994	EnsemblPlantsGene:GSBRNA2T00147394001	ncoils:Coil	PANTHER:PTHR35715	ProteinID:CDX87994	ProteinID:CDX87994.1
SEG:seg	UniParc:UPI000253F01A	MapMan:35.2	:	:	:

Description

BnaA06g25850D

Coordinates

chrLK031854:+:38299..39180

Molecular Weight (calculated)

13794.5 Da

IEP (calculated)

5.464

GRAVY (calculated)

-0.959

Length

117 amino acids

Sequence
(BLAST)

001: MSLRIKVVVD KFVEELKQAL DADIQDRIMK EREMQSYIEE REREVAEREA AWKAELSRRE TEIARQEARL KMERENLEKE KSVLMGTASN QDNQDGALEI
101: TVSGEKYRCL RFSKAKK

Best Arabidopsis Sequence Match ( AT2G17350.1 )
(BLAST)

001: MSLRIKLVVD KFVEELKQAL DADIQDRIMK EREMQSYIEE REREVAEREA AWKAELSRRE TEIARQEARL KMERENLEKE KSVLMGTASN QDNQDGALEI
101: TVSGEKYRCL RFSKAKK

Arabidopsis Description

At2g17350 [Source:UniProtKB/TrEMBL;Acc:Q8L8N3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.