Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH70967 | Soybean | nucleus | 50.81 | 50.91 |
| KRH75108 | Soybean | golgi, mitochondrion, nucleus, plasma membrane | 50.87 | 49.42 |
| Solyc01g111910.2.1 | Tomato | nucleus | 47.5 | 48.91 |
| AT4G38440.1 | Thale cress | nucleus | 44.44 | 48.6 |
| GSMUA_Achr6P00840_001 | Banana | cytosol | 36.39 | 48.46 |
| TraesCS7B01G263600.1 | Wheat | nucleus | 40.82 | 43.28 |
| TraesCS7A01G364300.1 | Wheat | nucleus | 40.82 | 43.05 |
| TraesCS7D01G358700.1 | Wheat | nucleus | 40.64 | 42.83 |
| HORVU7Hr1G086420.15 | Barley | cytosol, mitochondrion | 40.7 | 42.26 |
| EER89976 | Sorghum | cytosol | 40.39 | 41.77 |
| Os06t0574400-01 | Rice | endoplasmic reticulum, plasma membrane | 20.16 | 41.36 |
| Zm00001d046366_P001 | Maize | cytosol, nucleus, plasma membrane, plastid | 39.64 | 41.26 |
| Bra025599.1-P | Field mustard | cytosol, nucleus, plasma membrane, plastid | 41.45 | 38.83 |
| CDY36825 | Canola | cytosol | 41.32 | 38.71 |
| CDY44583 | Canola | cytosol, nucleus, plasma membrane, plastid | 41.32 | 38.65 |
| Os06t0574450-00 | Rice | nucleus | 10.17 | 35.13 |
Protein Annotations
| EntrezGene:100258889 | wikigene:100258889 | MapMan:15.3.6.5 | InterPro:ARM-type_fold | ProteinID:CCB60580 | ProteinID:CCB60580.1 |
| ncoils:Coil | UniProt:F6I0W4 | EMBL:FN596508 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006366 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EntrezGene:LOC100258889 | wikigene:LOC100258889 | PFAM:PF08620 |
| PFAM:PF08621 | PANTHER:PTHR21483 | InterPro:RNA_pol_II_AP1_C | InterPro:RNA_pol_II_AP1_N | SUPFAM:SSF48371 | UniParc:UPI0001982E9D |
| ArrayExpress:VIT_03s0038g03100 | EnsemblPlantsGene:VIT_03s0038g03100 | EnsemblPlants:VIT_03s0038g03100.t01 | unigene:Vvi.18211 | RefSeq:XP_002278562 | RefSeq:XP_002278562.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:2212401..2224945
Molecular Weight (calculated)
179000.0 Da
IEP (calculated)
5.744
GRAVY (calculated)
-0.303
Length
1602 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEKNQGSSSS KSSGPQRPSQ RKMIGAKAMR INEDEGARLV GSIVEKGISG KPPAPSSAPQ PTVLPFPVAR HRSHGPHWSP FGSKMGGGND KKGADNSDSD
0101: DGEDMDLTGF DQIAAFANPI ERKQKKGLDL SNWRELVPND NSLLPAEKKD KVLLAELKEQ NNKGKTTENA DKRKMSSYAA LADADVLNPK EMNVESGLNS
0201: VAANMELDKL DPVPDIARAQ LEIVESMRPR LVEVQKNQGQ VNMEEQSHMV PGSENFGIDQ GSMTLESQID AENRAQLERM SHEEIAEAQA EIMEKMNPTL
0301: LKMLKKRGQD KLKKQKCSGS DLATNGQLHN LQDENQLTQD TKGFSVVESD DSHMVTETAS KDAQRGQDNV ALQNSGPGNS GLWNAWSERV EAVRDLRFSW
0401: DGTVIENDFG QVSKTDNNSV RSGYNADNVT ERDFLRTEGD PGAAGYTIKE ALALARSMVP GQRALAYHLL ASVLYKALDN IHRHQVGYTM RSVNNSGVFI
0501: DWEAVWAYAL GPEPELVLAL RMSLDDNHNS VVLACAKVIQ CVLSCDMNEY FVDVSERLAT CEKVVCTAPV FRSRPEIELG FLHGGFWKYN TKPSNIFPLS
0601: EDIMDAKSEE KLTIQDDIVV AGQDFAAGLV RMGILPRIRY LLETDPTVAL EECMISILIA IARHSPTCAN AIIKCERLVQ TVVGRFAEKD KMGVYPSKIK
0701: SVTLLKVLAQ SDKKNCIEFI KSGIFQDATL NLSQCPLSLD QWIKSGKENC KHASALMVEQ LRFWKVCIQY GYCVSYFGDF FPAMHLWLNP PTFEKLIENN
0801: VLNEFAAITT EAYLVLESLA RRLSNFSSQK HISELVDDDK ETWSWSHVGP IVNIALKWMA FKTNPDISRF FDQQKGIESN SVHKDLSMRP LLWVISATMH
0901: MLSSVLKRVT PEDTISLPES GGLLPGLPEF VSKIGLEVIN NSFLSFPGVN DKEYGTDPSA GCSFIEELCH LRHHGDYEIS LGSTCCLHGL VQQVVSLDNL
1001: IQLAKTEIQT PSFQGHSFAK EGKVLEDGVL KWSLIELKTG LITFMKLVTS EWHYLQSIEI FGRGGPAPGV GLGWGASGGG FWSKTVLLAQ TDAELLIHLL
1101: EIFPFLFSED IPLDEDMTFT IQRINSALEV CLTLGPRNRV TMEKALDILL QVPVLKYLNL CICRFLHLNK EIKQFGWVYQ EEDFLIFSKM LASHFRKRWL
1201: CVKKKFKAVE SKSSSGQKAS TKGSESLDTI PEDMDISNTT IQDHDCPSLL VEWAHQRLPL PVHWFLSPIS TIHDGKHTEP PSNSNIQNLV KNPTDFLEVA
1301: RGGLFFLLGI EAMSSFLSSD VPSPVRSVPV IWKLHSLSVT LLDGMSVLEE KKSRDVYEAL QELYGQLLDE SRVHRSTKPT PETGEKNSIE FLRFQSDIHE
1401: SYSTFIETLV EQFAAISYGD LIYGRQVAIY LHRSVEAPVR LAAWNALSNA RVLELLPPLE KCSADAEGYL EPVENNEGIL EAYVKSWVTG ALDRAATRGS
1501: VTFTLVLHHL SSVIFEDDAD VKLSLRNKLA KSLLRDYSRK RQHEGLMLQL LRYNKQFASP QPEWMKEGET EKRFRFLTEA CEGNASLLKE VEKLKSSFRQ
1601: DQ
0101: DGEDMDLTGF DQIAAFANPI ERKQKKGLDL SNWRELVPND NSLLPAEKKD KVLLAELKEQ NNKGKTTENA DKRKMSSYAA LADADVLNPK EMNVESGLNS
0201: VAANMELDKL DPVPDIARAQ LEIVESMRPR LVEVQKNQGQ VNMEEQSHMV PGSENFGIDQ GSMTLESQID AENRAQLERM SHEEIAEAQA EIMEKMNPTL
0301: LKMLKKRGQD KLKKQKCSGS DLATNGQLHN LQDENQLTQD TKGFSVVESD DSHMVTETAS KDAQRGQDNV ALQNSGPGNS GLWNAWSERV EAVRDLRFSW
0401: DGTVIENDFG QVSKTDNNSV RSGYNADNVT ERDFLRTEGD PGAAGYTIKE ALALARSMVP GQRALAYHLL ASVLYKALDN IHRHQVGYTM RSVNNSGVFI
0501: DWEAVWAYAL GPEPELVLAL RMSLDDNHNS VVLACAKVIQ CVLSCDMNEY FVDVSERLAT CEKVVCTAPV FRSRPEIELG FLHGGFWKYN TKPSNIFPLS
0601: EDIMDAKSEE KLTIQDDIVV AGQDFAAGLV RMGILPRIRY LLETDPTVAL EECMISILIA IARHSPTCAN AIIKCERLVQ TVVGRFAEKD KMGVYPSKIK
0701: SVTLLKVLAQ SDKKNCIEFI KSGIFQDATL NLSQCPLSLD QWIKSGKENC KHASALMVEQ LRFWKVCIQY GYCVSYFGDF FPAMHLWLNP PTFEKLIENN
0801: VLNEFAAITT EAYLVLESLA RRLSNFSSQK HISELVDDDK ETWSWSHVGP IVNIALKWMA FKTNPDISRF FDQQKGIESN SVHKDLSMRP LLWVISATMH
0901: MLSSVLKRVT PEDTISLPES GGLLPGLPEF VSKIGLEVIN NSFLSFPGVN DKEYGTDPSA GCSFIEELCH LRHHGDYEIS LGSTCCLHGL VQQVVSLDNL
1001: IQLAKTEIQT PSFQGHSFAK EGKVLEDGVL KWSLIELKTG LITFMKLVTS EWHYLQSIEI FGRGGPAPGV GLGWGASGGG FWSKTVLLAQ TDAELLIHLL
1101: EIFPFLFSED IPLDEDMTFT IQRINSALEV CLTLGPRNRV TMEKALDILL QVPVLKYLNL CICRFLHLNK EIKQFGWVYQ EEDFLIFSKM LASHFRKRWL
1201: CVKKKFKAVE SKSSSGQKAS TKGSESLDTI PEDMDISNTT IQDHDCPSLL VEWAHQRLPL PVHWFLSPIS TIHDGKHTEP PSNSNIQNLV KNPTDFLEVA
1301: RGGLFFLLGI EAMSSFLSSD VPSPVRSVPV IWKLHSLSVT LLDGMSVLEE KKSRDVYEAL QELYGQLLDE SRVHRSTKPT PETGEKNSIE FLRFQSDIHE
1401: SYSTFIETLV EQFAAISYGD LIYGRQVAIY LHRSVEAPVR LAAWNALSNA RVLELLPPLE KCSADAEGYL EPVENNEGIL EAYVKSWVTG ALDRAATRGS
1501: VTFTLVLHHL SSVIFEDDAD VKLSLRNKLA KSLLRDYSRK RQHEGLMLQL LRYNKQFASP QPEWMKEGET EKRFRFLTEA CEGNASLLKE VEKLKSSFRQ
1601: DQ
0001: MEQSSGRVNP EQPNNVLASL VGSIVEKGIS ENKPPSKPLP PRPSLLSFPV ARHRSHGPHL APVGSSIAQP KDYNDDQEEE EAEERFMNAD SIAAFAKPLQ
0101: RKEKKDMDLG RWKDMVSGDD PASTHVPQQS RKLKIIETRP PYVASADAAT TSSNTLLAAR ASDQREFVSD KAPFIKNLGT KERVPLNASP PLAVSNGLGT
0201: RHASSSLESD IDVENHAKLQ TMSPDEIAEA QAELLDKMDP ALLSILKKRG EAKLKKRKHS VQGVSITDET AKNSRTEGHF VTPKVMAIPK EKSVVQKPGI
0301: AQGFVWDAWT ERVEAARDLR FSFDGNVVEE DVVSPAETGG KWSGVESAAE RDFLRTEGDP GAAGYTIKEA IALARSVIPG QRCLALHLLA SVLDKALNKL
0401: CQSRIGYARE EKDKSTDWEA IWAYALGPEP ELVLALRMAL DDNHASVVIA CVKVIQCLLS CSLNENFFNI LENMGPHGKD IFTASVFRSK PEIDLGFLRG
0501: CYWKYSAKPS NIVAFREEIL DDGTEDTDTI QKDVFVAGQD VAAGLVRMDI LPRIYHLLET EPTAALEDSI ISVTIAIARH SPKCTTAILK YPKFVQTIVK
0601: RFQLNKRMDV LSSQINSVRL LKVLARYDQS TCMEFVKNGT FNAVTWHLFQ FTSSLDSWVK LGKQNCKLSS TLMVEQLRFW KVCIHSGCCV SRFPELFPAL
0701: CLWLSCPSFE KLREKNLISE FTSVSNEAYL VLEAFAETLP NMYSQNIPRN ESGTWDWSYV SPMIDSALSW ITLAPQLLKW EKGIESVSVS TTTLLWLYSG
0801: VMRTISKVLE KISAEGEEEP LPWLPEFVPK IGLAIIKHKL LSFSVADVSR FGKDSSRCSS FMEYLCFLRE RSQDDELALA SVNCLHGLTR TIVSIQNLIE
0901: SARSKMKAPH QVSISTGDES VLANGILAES LAELTSVSCS FRDSVSSEWP IVQSIELHKR GGLAPGVGLG WGASGGGFWS TRVLLAQAGA GLLSLFLNIS
1001: LSDSQNDQGS VGFMDKVNSA LAMCLIAGPR DYLLVERAFE YVLRPHALEH LACCIKSNKK NISFEWECSE GDYHRMSSML ASHFRHRWLQ QKGRSIAEEG
1101: VSGVRKGTVG LETIHEDGEM SNSSTQDKKS DSSTIEWAHQ RMPLPPHWFL SAISAVHSGK TSTGPPESTE LLEVAKAGVF FLAGLESSSG FGSLPSPVVS
1201: VPLVWKFHAL STVLLVGMDI IEDKNTRNLY NYLQELYGQF LDEARLNHRD TELLRFKSDI HENYSTFLEM VVEQYAAVSY GDVVYGRQVS VYLHQCVEHS
1301: VRLSAWTVLS NARVLELLPS LDKCLGEADG YLEPVEENEA VLEAYLKSWT CGALDRAATR GSVAYTLVVH HFSSLVFCNQ AKDKVSLRNK IVKTLVRDLS
1401: RKRHREGMML DLLRYKKGSA NAMEEEVIAA ETEKRMEVLK EGCEGNSTLL LELEKLKSAA LCGRR
0101: RKEKKDMDLG RWKDMVSGDD PASTHVPQQS RKLKIIETRP PYVASADAAT TSSNTLLAAR ASDQREFVSD KAPFIKNLGT KERVPLNASP PLAVSNGLGT
0201: RHASSSLESD IDVENHAKLQ TMSPDEIAEA QAELLDKMDP ALLSILKKRG EAKLKKRKHS VQGVSITDET AKNSRTEGHF VTPKVMAIPK EKSVVQKPGI
0301: AQGFVWDAWT ERVEAARDLR FSFDGNVVEE DVVSPAETGG KWSGVESAAE RDFLRTEGDP GAAGYTIKEA IALARSVIPG QRCLALHLLA SVLDKALNKL
0401: CQSRIGYARE EKDKSTDWEA IWAYALGPEP ELVLALRMAL DDNHASVVIA CVKVIQCLLS CSLNENFFNI LENMGPHGKD IFTASVFRSK PEIDLGFLRG
0501: CYWKYSAKPS NIVAFREEIL DDGTEDTDTI QKDVFVAGQD VAAGLVRMDI LPRIYHLLET EPTAALEDSI ISVTIAIARH SPKCTTAILK YPKFVQTIVK
0601: RFQLNKRMDV LSSQINSVRL LKVLARYDQS TCMEFVKNGT FNAVTWHLFQ FTSSLDSWVK LGKQNCKLSS TLMVEQLRFW KVCIHSGCCV SRFPELFPAL
0701: CLWLSCPSFE KLREKNLISE FTSVSNEAYL VLEAFAETLP NMYSQNIPRN ESGTWDWSYV SPMIDSALSW ITLAPQLLKW EKGIESVSVS TTTLLWLYSG
0801: VMRTISKVLE KISAEGEEEP LPWLPEFVPK IGLAIIKHKL LSFSVADVSR FGKDSSRCSS FMEYLCFLRE RSQDDELALA SVNCLHGLTR TIVSIQNLIE
0901: SARSKMKAPH QVSISTGDES VLANGILAES LAELTSVSCS FRDSVSSEWP IVQSIELHKR GGLAPGVGLG WGASGGGFWS TRVLLAQAGA GLLSLFLNIS
1001: LSDSQNDQGS VGFMDKVNSA LAMCLIAGPR DYLLVERAFE YVLRPHALEH LACCIKSNKK NISFEWECSE GDYHRMSSML ASHFRHRWLQ QKGRSIAEEG
1101: VSGVRKGTVG LETIHEDGEM SNSSTQDKKS DSSTIEWAHQ RMPLPPHWFL SAISAVHSGK TSTGPPESTE LLEVAKAGVF FLAGLESSSG FGSLPSPVVS
1201: VPLVWKFHAL STVLLVGMDI IEDKNTRNLY NYLQELYGQF LDEARLNHRD TELLRFKSDI HENYSTFLEM VVEQYAAVSY GDVVYGRQVS VYLHQCVEHS
1301: VRLSAWTVLS NARVLELLPS LDKCLGEADG YLEPVEENEA VLEAYLKSWT CGALDRAATR GSVAYTLVVH HFSSLVFCNQ AKDKVSLRNK IVKTLVRDLS
1401: RKRHREGMML DLLRYKKGSA NAMEEEVIAA ETEKRMEVLK EGCEGNSTLL LELEKLKSAA LCGRR
Arabidopsis Description
IYOTranscriptional elongation regulator MINIYO [Source:UniProtKB/Swiss-Prot;Acc:Q8GYU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.