Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 2
- cytosol 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44583 | Canola | cytosol, nucleus, plasma membrane, plastid | 93.39 | 93.23 |
| AT4G38440.1 | Thale cress | nucleus | 57.72 | 67.37 |
| VIT_03s0038g03100.t01 | Wine grape | nucleus | 38.83 | 41.45 |
| GSMUA_Achr6P00840_001 | Banana | cytosol | 28.6 | 40.65 |
| KRH70967 | Soybean | nucleus | 37.19 | 39.77 |
| KRH75108 | Soybean | golgi, mitochondrion, nucleus, plasma membrane | 36.73 | 38.08 |
| Solyc01g111910.2.1 | Tomato | nucleus | 34.39 | 37.79 |
| TraesCS7B01G263600.1 | Wheat | nucleus | 32.34 | 36.6 |
| TraesCS7A01G364300.1 | Wheat | nucleus | 32.22 | 36.27 |
| TraesCS7D01G358700.1 | Wheat | nucleus | 32.16 | 36.18 |
| EER89976 | Sorghum | cytosol | 32.16 | 35.51 |
| HORVU7Hr1G086420.15 | Barley | cytosol, mitochondrion | 31.99 | 35.45 |
| Os06t0574400-01 | Rice | endoplasmic reticulum, plasma membrane | 16.14 | 35.34 |
| Zm00001d046366_P001 | Maize | cytosol, nucleus, plasma membrane, plastid | 31.52 | 35.02 |
| Os06t0574450-00 | Rice | nucleus | 7.02 | 25.86 |
Protein Annotations
| MapMan:15.3.6.5 | MapMan:24.2.1.5 | InterPro:ARM-type_fold | EnsemblPlantsGene:Bra025599 | EnsemblPlants:Bra025599.1 | EnsemblPlants:Bra025599.1-P |
| ncoils:Coil | InterPro:EamA_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0030154 | UniProt:M4E9Z2 | PFAM:PF00892 | PFAM:PF08620 | PFAM:PF08621 | PANTHER:PTHR21483 |
| InterPro:RNA_pol_II_AP1_C | InterPro:RNA_pol_II_AP1_N | SUPFAM:SSF103481 | SUPFAM:SSF48371 | TMHMM:TMhelix | UniParc:UPI0002544D1B |
| SEG:seg | : | : | : | : | : |
Description
AT4G38440 (E=0.0) | LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 210 Blast hits to 166 proteins in 68 species: Archae - 0; Bacteria - 2; Metazoa - 135; Fungi - 41; Plants - 22; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Coordinates
chrA04:-:7577212..7585972
Molecular Weight (calculated)
189521.0 Da
IEP (calculated)
6.006
GRAVY (calculated)
0.009
Length
1710 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTEKEQSSGR VNPMAPLSSL VGSIVEKGFP ENKPPPPKPS RLPFPVARHR SHGPHVGSRP QPKVPIVKEE EDDDEEGLIN AENYARLQTM SHEEIVKAQA
0101: ELYEKMDPAL VTILKKRGQD KLKKRKHSVP EVSEECPSDI HSPQGGQEAV TPSPSSQVTA IPKEASVASQ GFFWDSWTER VEAVRDLRFS FDGCVLENVV
0201: VPPPETGVNM SAVERDFLRT EGDPGAAGYT IKEAIALTRS VIPGQRCLAL NLLASLLNKA LSKLCQSGIG QQKVQSTDWE AIWAYALGPE PGLVLALRMA
0301: LDDNHASVVL ACAKVIQCLL SCSLNENFFD LLENMGPCGK DMFTAPVFRG KPEIDLGLLP GCYWKYSAKP SNIVPFREEI MDDGTEDTDT IQKDVFVAGQ
0401: DVAAGLVRMD ILPRIYHLLE TEPTAPLEEC LISATIAIAR HSPKCTTAIL KYPRFVQTIV KRFKLNKRMD VLPSQIFSVR LLKVLARYDK RTCMEFVKNG
0501: TFNEVTWHLF QFTSSLDSWV KLGKHKCKLS SDLMVEQLRF LKVCIQSGCC ISQYPELFPA LCLWLSCPSF EKLKEKNLIR EFASVSREAY LVLEAFAGTL
0601: PSLYSPRNES DAWDWRYVSP MIDTALSWIT LAPELLEWER GTESVSMSTA SLLWLYSAVI RTVSKVLDKI SAHGEEEPLP WLPEFVPKIG LTIIKHKLLS
0701: FSVEKDPSKC SSFMEFLCLL RENCQDEELA LASVSCLHGL TRTVVSIQTL IESARSKMET PQGSESIRDG SLLAKGILTE SLGDVTSVWS SFRDYVASEW
0801: PIMQSIEIHK RGGLAPGVGL GWGASGGGFW STRVLLTQAD AGLLSLFLHI SQLDSQGSVL LMDKMNSALA MCLIAGPRDH LLVEKAFDYV LGPHALEHLA
0901: GCINSNKRTI TSEWKCSEGD YDRMSNVLTS HFKRRWFHPK RKSEAENGSK KVAVGLETIH EEGEMPTEDQ KSDSLIVEWA HQRLPLPPQW FLSSISAVHV
1001: GKTSAEDQEP TELLEVAKAG VFFIAGLESA SGLGTVPTPV SSVPLVWKFH ALSTVLLAGM DIIEDKNTRN LYSYLQELYG HVLDERRQSS GRETELLRFK
1101: SDVFESYSTF LEMLVEQYAA VSYGDVLYGR QMSIYLHQCV EPSVRLSAWT ALSNARVLEL LPSLDKCLGD AQGYLEPAEE NEGVLEAYLK SWTCGALDRA
1201: ATRGSVAFTL VLHQFSSLLF CNGDNKDNKE EEGSLRSKIV RTLVRDLSRK QHRQGMMVDL LGYNSKGCAD AMEVEEEEES QKREGERRME VLKEACQGNS
1301: SLLSELEKLK ECVRVKSQED YLQPNLLSAN YIFLELWPFP DSPFREERVA WRYINRDVVP FAVMVAVECV TVGSTTLFKA ASLRGLSFYV FVFYTYVVAA
1401: LVLLPLSFIF GRSRRLPSAK APFFFKIFLL ALVGFVSMLS GCKGVEYSNP TLASAISTLT PAFTFTLAVI FRMERIVLKS SASQAKVIGT IVSISGALVI
1501: VLYKGPKLLS SASLTSSEAT VSLYQDLTSF DSSWIIGGVL LVTQYLLVSL WYILQTQVME VYPEKTTVVL LYILCATIIS APVCMLAEKG LSSFLLKPGV
1601: PLASVMYTGG LVSSVGTVIH TWGLHMKGPV YISLFKPLSI VIAVVMAAIF LGDALHLGSV IGSVVLSCGF YTVIWGKARE DSTRNVADTE KSPLLVTHTV
1701: EDEASSLRCD
0101: ELYEKMDPAL VTILKKRGQD KLKKRKHSVP EVSEECPSDI HSPQGGQEAV TPSPSSQVTA IPKEASVASQ GFFWDSWTER VEAVRDLRFS FDGCVLENVV
0201: VPPPETGVNM SAVERDFLRT EGDPGAAGYT IKEAIALTRS VIPGQRCLAL NLLASLLNKA LSKLCQSGIG QQKVQSTDWE AIWAYALGPE PGLVLALRMA
0301: LDDNHASVVL ACAKVIQCLL SCSLNENFFD LLENMGPCGK DMFTAPVFRG KPEIDLGLLP GCYWKYSAKP SNIVPFREEI MDDGTEDTDT IQKDVFVAGQ
0401: DVAAGLVRMD ILPRIYHLLE TEPTAPLEEC LISATIAIAR HSPKCTTAIL KYPRFVQTIV KRFKLNKRMD VLPSQIFSVR LLKVLARYDK RTCMEFVKNG
0501: TFNEVTWHLF QFTSSLDSWV KLGKHKCKLS SDLMVEQLRF LKVCIQSGCC ISQYPELFPA LCLWLSCPSF EKLKEKNLIR EFASVSREAY LVLEAFAGTL
0601: PSLYSPRNES DAWDWRYVSP MIDTALSWIT LAPELLEWER GTESVSMSTA SLLWLYSAVI RTVSKVLDKI SAHGEEEPLP WLPEFVPKIG LTIIKHKLLS
0701: FSVEKDPSKC SSFMEFLCLL RENCQDEELA LASVSCLHGL TRTVVSIQTL IESARSKMET PQGSESIRDG SLLAKGILTE SLGDVTSVWS SFRDYVASEW
0801: PIMQSIEIHK RGGLAPGVGL GWGASGGGFW STRVLLTQAD AGLLSLFLHI SQLDSQGSVL LMDKMNSALA MCLIAGPRDH LLVEKAFDYV LGPHALEHLA
0901: GCINSNKRTI TSEWKCSEGD YDRMSNVLTS HFKRRWFHPK RKSEAENGSK KVAVGLETIH EEGEMPTEDQ KSDSLIVEWA HQRLPLPPQW FLSSISAVHV
1001: GKTSAEDQEP TELLEVAKAG VFFIAGLESA SGLGTVPTPV SSVPLVWKFH ALSTVLLAGM DIIEDKNTRN LYSYLQELYG HVLDERRQSS GRETELLRFK
1101: SDVFESYSTF LEMLVEQYAA VSYGDVLYGR QMSIYLHQCV EPSVRLSAWT ALSNARVLEL LPSLDKCLGD AQGYLEPAEE NEGVLEAYLK SWTCGALDRA
1201: ATRGSVAFTL VLHQFSSLLF CNGDNKDNKE EEGSLRSKIV RTLVRDLSRK QHRQGMMVDL LGYNSKGCAD AMEVEEEEES QKREGERRME VLKEACQGNS
1301: SLLSELEKLK ECVRVKSQED YLQPNLLSAN YIFLELWPFP DSPFREERVA WRYINRDVVP FAVMVAVECV TVGSTTLFKA ASLRGLSFYV FVFYTYVVAA
1401: LVLLPLSFIF GRSRRLPSAK APFFFKIFLL ALVGFVSMLS GCKGVEYSNP TLASAISTLT PAFTFTLAVI FRMERIVLKS SASQAKVIGT IVSISGALVI
1501: VLYKGPKLLS SASLTSSEAT VSLYQDLTSF DSSWIIGGVL LVTQYLLVSL WYILQTQVME VYPEKTTVVL LYILCATIIS APVCMLAEKG LSSFLLKPGV
1601: PLASVMYTGG LVSSVGTVIH TWGLHMKGPV YISLFKPLSI VIAVVMAAIF LGDALHLGSV IGSVVLSCGF YTVIWGKARE DSTRNVADTE KSPLLVTHTV
1701: EDEASSLRCD
0001: MEQSSGRVNP EQPNNVLASL VGSIVEKGIS ENKPPSKPLP PRPSLLSFPV ARHRSHGPHL APVGSSIAQP KDYNDDQEEE EAEERFMNAD SIAAFAKPLQ
0101: RKEKKDMDLG RWKDMVSGDD PASTHVPQQS RKLKIIETRP PYVASADAAT TSSNTLLAAR ASDQREFVSD KAPFIKNLGT KERVPLNASP PLAVSNGLGT
0201: RHASSSLESD IDVENHAKLQ TMSPDEIAEA QAELLDKMDP ALLSILKKRG EAKLKKRKHS VQGVSITDET AKNSRTEGHF VTPKVMAIPK EKSVVQKPGI
0301: AQGFVWDAWT ERVEAARDLR FSFDGNVVEE DVVSPAETGG KWSGVESAAE RDFLRTEGDP GAAGYTIKEA IALARSVIPG QRCLALHLLA SVLDKALNKL
0401: CQSRIGYARE EKDKSTDWEA IWAYALGPEP ELVLALRMAL DDNHASVVIA CVKVIQCLLS CSLNENFFNI LENMGPHGKD IFTASVFRSK PEIDLGFLRG
0501: CYWKYSAKPS NIVAFREEIL DDGTEDTDTI QKDVFVAGQD VAAGLVRMDI LPRIYHLLET EPTAALEDSI ISVTIAIARH SPKCTTAILK YPKFVQTIVK
0601: RFQLNKRMDV LSSQINSVRL LKVLARYDQS TCMEFVKNGT FNAVTWHLFQ FTSSLDSWVK LGKQNCKLSS TLMVEQLRFW KVCIHSGCCV SRFPELFPAL
0701: CLWLSCPSFE KLREKNLISE FTSVSNEAYL VLEAFAETLP NMYSQNIPRN ESGTWDWSYV SPMIDSALSW ITLAPQLLKW EKGIESVSVS TTTLLWLYSG
0801: VMRTISKVLE KISAEGEEEP LPWLPEFVPK IGLAIIKHKL LSFSVADVSR FGKDSSRCSS FMEYLCFLRE RSQDDELALA SVNCLHGLTR TIVSIQNLIE
0901: SARSKMKAPH QVSISTGDES VLANGILAES LAELTSVSCS FRDSVSSEWP IVQSIELHKR GGLAPGVGLG WGASGGGFWS TRVLLAQAGA GLLSLFLNIS
1001: LSDSQNDQGS VGFMDKVNSA LAMCLIAGPR DYLLVERAFE YVLRPHALEH LACCIKSNKK NISFEWECSE GDYHRMSSML ASHFRHRWLQ QKGRSIAEEG
1101: VSGVRKGTVG LETIHEDGEM SNSSTQDKKS DSSTIEWAHQ RMPLPPHWFL SAISAVHSGK TSTGPPESTE LLEVAKAGVF FLAGLESSSG FGSLPSPVVS
1201: VPLVWKFHAL STVLLVGMDI IEDKNTRNLY NYLQELYGQF LDEARLNHRD TELLRFKSDI HENYSTFLEM VVEQYAAVSY GDVVYGRQVS VYLHQCVEHS
1301: VRLSAWTVLS NARVLELLPS LDKCLGEADG YLEPVEENEA VLEAYLKSWT CGALDRAATR GSVAYTLVVH HFSSLVFCNQ AKDKVSLRNK IVKTLVRDLS
1401: RKRHREGMML DLLRYKKGSA NAMEEEVIAA ETEKRMEVLK EGCEGNSTLL LELEKLKSAA LCGRR
0101: RKEKKDMDLG RWKDMVSGDD PASTHVPQQS RKLKIIETRP PYVASADAAT TSSNTLLAAR ASDQREFVSD KAPFIKNLGT KERVPLNASP PLAVSNGLGT
0201: RHASSSLESD IDVENHAKLQ TMSPDEIAEA QAELLDKMDP ALLSILKKRG EAKLKKRKHS VQGVSITDET AKNSRTEGHF VTPKVMAIPK EKSVVQKPGI
0301: AQGFVWDAWT ERVEAARDLR FSFDGNVVEE DVVSPAETGG KWSGVESAAE RDFLRTEGDP GAAGYTIKEA IALARSVIPG QRCLALHLLA SVLDKALNKL
0401: CQSRIGYARE EKDKSTDWEA IWAYALGPEP ELVLALRMAL DDNHASVVIA CVKVIQCLLS CSLNENFFNI LENMGPHGKD IFTASVFRSK PEIDLGFLRG
0501: CYWKYSAKPS NIVAFREEIL DDGTEDTDTI QKDVFVAGQD VAAGLVRMDI LPRIYHLLET EPTAALEDSI ISVTIAIARH SPKCTTAILK YPKFVQTIVK
0601: RFQLNKRMDV LSSQINSVRL LKVLARYDQS TCMEFVKNGT FNAVTWHLFQ FTSSLDSWVK LGKQNCKLSS TLMVEQLRFW KVCIHSGCCV SRFPELFPAL
0701: CLWLSCPSFE KLREKNLISE FTSVSNEAYL VLEAFAETLP NMYSQNIPRN ESGTWDWSYV SPMIDSALSW ITLAPQLLKW EKGIESVSVS TTTLLWLYSG
0801: VMRTISKVLE KISAEGEEEP LPWLPEFVPK IGLAIIKHKL LSFSVADVSR FGKDSSRCSS FMEYLCFLRE RSQDDELALA SVNCLHGLTR TIVSIQNLIE
0901: SARSKMKAPH QVSISTGDES VLANGILAES LAELTSVSCS FRDSVSSEWP IVQSIELHKR GGLAPGVGLG WGASGGGFWS TRVLLAQAGA GLLSLFLNIS
1001: LSDSQNDQGS VGFMDKVNSA LAMCLIAGPR DYLLVERAFE YVLRPHALEH LACCIKSNKK NISFEWECSE GDYHRMSSML ASHFRHRWLQ QKGRSIAEEG
1101: VSGVRKGTVG LETIHEDGEM SNSSTQDKKS DSSTIEWAHQ RMPLPPHWFL SAISAVHSGK TSTGPPESTE LLEVAKAGVF FLAGLESSSG FGSLPSPVVS
1201: VPLVWKFHAL STVLLVGMDI IEDKNTRNLY NYLQELYGQF LDEARLNHRD TELLRFKSDI HENYSTFLEM VVEQYAAVSY GDVVYGRQVS VYLHQCVEHS
1301: VRLSAWTVLS NARVLELLPS LDKCLGEADG YLEPVEENEA VLEAYLKSWT CGALDRAATR GSVAYTLVVH HFSSLVFCNQ AKDKVSLRNK IVKTLVRDLS
1401: RKRHREGMML DLLRYKKGSA NAMEEEVIAA ETEKRMEVLK EGCEGNSTLL LELEKLKSAA LCGRR
Arabidopsis Description
IYOTranscriptional elongation regulator MINIYO [Source:UniProtKB/Swiss-Prot;Acc:Q8GYU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.