Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G358700.1 | Wheat | nucleus | 96.23 | 95.66 |
| TraesCS7A01G364300.1 | Wheat | nucleus | 96.03 | 95.52 |
| HORVU7Hr1G086420.15 | Barley | cytosol, mitochondrion | 92.19 | 90.28 |
| Os06t0574400-01 | Rice | endoplasmic reticulum, plasma membrane | 36.4 | 70.42 |
| EER89976 | Sorghum | cytosol | 71.74 | 69.98 |
| Zm00001d046366_P001 | Maize | cytosol, nucleus, plasma membrane, plastid | 70.42 | 69.14 |
| Os06t0574450-00 | Rice | nucleus | 20.25 | 65.95 |
| GSMUA_Achr6P00840_001 | Banana | cytosol | 38.72 | 48.63 |
| VIT_03s0038g03100.t01 | Wine grape | nucleus | 43.28 | 40.82 |
| AT4G38440.1 | Thale cress | nucleus | 38.91 | 40.14 |
| KRH70967 | Soybean | nucleus | 41.03 | 38.77 |
| Solyc01g111910.2.1 | Tomato | nucleus | 39.44 | 38.3 |
| KRH75108 | Soybean | golgi, mitochondrion, nucleus, plasma membrane | 41.03 | 37.6 |
| CDY36825 | Canola | cytosol | 37.0 | 32.69 |
| CDY44583 | Canola | cytosol, nucleus, plasma membrane, plastid | 36.8 | 32.46 |
| Bra025599.1-P | Field mustard | cytosol, nucleus, plasma membrane, plastid | 36.6 | 32.34 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G263600.1 | EnsemblPlantsGene:TraesCS7B01G263600 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030154 | InterPro:ARM-type_fold |
| InterPro:RNA_pol_II_AP1_C | InterPro:RNA_pol_II_AP1_N | PANTHER:PTHR21483 | PFAM:PF08620 | PFAM:PF08621 | SEG:seg |
| SUPFAM:SSF48371 | MapMan:15.3.6.5 | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:484044235..484052587
Molecular Weight (calculated)
167060.0 Da
IEP (calculated)
6.336
GRAVY (calculated)
-0.191
Length
1511 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEDATKRRHQ PGALPARRKV VEGPFDPPPP PPAAAAAATV VSPAHLVGAI VEKGFSAAAP SSAPRPTVLP FPVARHRSHG PHWKPVAKGA DKKKGEEDYG
0101: MDVDDMDYQP AAAVAGPVRR KEKKGMDFSR WREFVADDVP PKRRQAKEDN TKKIDHVAEV KNVVGQVGER GLGGDGMELD SGNGREALGP TGLVSDVLSK
0201: KLINAENGLT KGGAGVAELQ GEGMQLDDGE PSISAEINAE NTARLAGMSA EEIAEAQADI LNRMDPALVE VLRRRGREKS GGKKDEGKDK SRQTSGPRKT
0301: AKAIPGEHLT AGEQSAHSWK AWSERVERIR LCRFALDGDI LGFQSCQEQP DGKKTHGESV AERDFLRTEG DPAAVGYTIN EALALTRSMV PGQRVLGLQL
0401: LASVLNRALH NLHKMDLADN VEGANYAEKA YDWQAVWAYA LGPEPELVLS LRMALDDNHE SVVLTCAKVI NVMLSYDMNE SYFEFSEKLI NKMEDICTAP
0501: VFRSKPDVDG GFLEGGFWKY NTKPSNILPH YGEDDEEESD EKHTIQDDVI VSGQDVAAGL IRMGILPRIC SLLEMDPPQI QKDYLVSILV ALARHSPQSA
0601: DAILNCTKLV QCVVKLLDRQ GSMEIHSSMI RGVTLLKVLS KYNRQTCLNF VNNGVFHQAM WQWYLPAYTL KDWIKPGKEQ CKLSSAMMVE QLRFWRTCIS
0701: YGFCISHFTD FFPVLCLWLS PPVFQNLSEH NVLSEFSSIA RESFLVLGAL AQRLPLLHSV EQFGKQDMGV PGSYGEMWSW SHVVPMVNSA LSWLHLNDIP
0801: YLCSLINGQN ENTTHTPEQS CLVLLISSVL GMLNSTLERI SPEGTPDSRS YCLPWIPDFV PKIGLGIITN GFFSFSCTEV EQLPSRGVSL VQGLCHLRCW
0901: GDVDASLSSI SCLQRLVQLS CSVDRVIQRA TINSSEHLKE SKAGLAGKIL QEGISSLWQN DLLNFLTSLL PLISSQWPVL KNIEMFGRGG LAPGVGFGWG
1001: TCGGGFWSLK CLLTQLDSQL VLELIKIVSA APEGLVTLSK GANLDNVTNP FTNASERISP VLGVSLIAGP GQISTLERAF DILFQPSVLK CLRSSIHCLA
1101: SQMKLPKTFE WDITEDEYQH FSNVLNSHFR SRWLAIKKKN PDKHARNNSA INKPKVPEML ETIQEEMELT EVVNPPCSTL VLEWAHQRLP LPVHWILSSI
1201: CCTDDADVSR AGLIFLLGLE AVSAAPSLDV PLVWKMHALS ASVRTNMDLL QEDRSKDVFE VLQELYGQHL DMLCQKYYRS HSANNDEVVG SVATVEEVKV
1301: INTHEILRFK EKIHESYTTF VESVVDQFAA VSYGDVIFGR QVAIYLHRCV ETTVRLAAWN ALSTAYVLEL LPPLDKCIGD VKGYLEPLEG DEGILEAYAK
1401: SWTSGILDKA ARRDSMSFTL AKHHLSGFVF RRSASVKVRN KMVKSLIRCY SQKQHHEAML QSLVLQGIPR DSQYGSEVGR RIEILKDACE MNSSLLAEVQ
1501: RLKTSIEGAI S
0101: MDVDDMDYQP AAAVAGPVRR KEKKGMDFSR WREFVADDVP PKRRQAKEDN TKKIDHVAEV KNVVGQVGER GLGGDGMELD SGNGREALGP TGLVSDVLSK
0201: KLINAENGLT KGGAGVAELQ GEGMQLDDGE PSISAEINAE NTARLAGMSA EEIAEAQADI LNRMDPALVE VLRRRGREKS GGKKDEGKDK SRQTSGPRKT
0301: AKAIPGEHLT AGEQSAHSWK AWSERVERIR LCRFALDGDI LGFQSCQEQP DGKKTHGESV AERDFLRTEG DPAAVGYTIN EALALTRSMV PGQRVLGLQL
0401: LASVLNRALH NLHKMDLADN VEGANYAEKA YDWQAVWAYA LGPEPELVLS LRMALDDNHE SVVLTCAKVI NVMLSYDMNE SYFEFSEKLI NKMEDICTAP
0501: VFRSKPDVDG GFLEGGFWKY NTKPSNILPH YGEDDEEESD EKHTIQDDVI VSGQDVAAGL IRMGILPRIC SLLEMDPPQI QKDYLVSILV ALARHSPQSA
0601: DAILNCTKLV QCVVKLLDRQ GSMEIHSSMI RGVTLLKVLS KYNRQTCLNF VNNGVFHQAM WQWYLPAYTL KDWIKPGKEQ CKLSSAMMVE QLRFWRTCIS
0701: YGFCISHFTD FFPVLCLWLS PPVFQNLSEH NVLSEFSSIA RESFLVLGAL AQRLPLLHSV EQFGKQDMGV PGSYGEMWSW SHVVPMVNSA LSWLHLNDIP
0801: YLCSLINGQN ENTTHTPEQS CLVLLISSVL GMLNSTLERI SPEGTPDSRS YCLPWIPDFV PKIGLGIITN GFFSFSCTEV EQLPSRGVSL VQGLCHLRCW
0901: GDVDASLSSI SCLQRLVQLS CSVDRVIQRA TINSSEHLKE SKAGLAGKIL QEGISSLWQN DLLNFLTSLL PLISSQWPVL KNIEMFGRGG LAPGVGFGWG
1001: TCGGGFWSLK CLLTQLDSQL VLELIKIVSA APEGLVTLSK GANLDNVTNP FTNASERISP VLGVSLIAGP GQISTLERAF DILFQPSVLK CLRSSIHCLA
1101: SQMKLPKTFE WDITEDEYQH FSNVLNSHFR SRWLAIKKKN PDKHARNNSA INKPKVPEML ETIQEEMELT EVVNPPCSTL VLEWAHQRLP LPVHWILSSI
1201: CCTDDADVSR AGLIFLLGLE AVSAAPSLDV PLVWKMHALS ASVRTNMDLL QEDRSKDVFE VLQELYGQHL DMLCQKYYRS HSANNDEVVG SVATVEEVKV
1301: INTHEILRFK EKIHESYTTF VESVVDQFAA VSYGDVIFGR QVAIYLHRCV ETTVRLAAWN ALSTAYVLEL LPPLDKCIGD VKGYLEPLEG DEGILEAYAK
1401: SWTSGILDKA ARRDSMSFTL AKHHLSGFVF RRSASVKVRN KMVKSLIRCY SQKQHHEAML QSLVLQGIPR DSQYGSEVGR RIEILKDACE MNSSLLAEVQ
1501: RLKTSIEGAI S
0001: MEQSSGRVNP EQPNNVLASL VGSIVEKGIS ENKPPSKPLP PRPSLLSFPV ARHRSHGPHL APVGSSIAQP KDYNDDQEEE EAEERFMNAD SIAAFAKPLQ
0101: RKEKKDMDLG RWKDMVSGDD PASTHVPQQS RKLKIIETRP PYVASADAAT TSSNTLLAAR ASDQREFVSD KAPFIKNLGT KERVPLNASP PLAVSNGLGT
0201: RHASSSLESD IDVENHAKLQ TMSPDEIAEA QAELLDKMDP ALLSILKKRG EAKLKKRKHS VQGVSITDET AKNSRTEGHF VTPKVMAIPK EKSVVQKPGI
0301: AQGFVWDAWT ERVEAARDLR FSFDGNVVEE DVVSPAETGG KWSGVESAAE RDFLRTEGDP GAAGYTIKEA IALARSVIPG QRCLALHLLA SVLDKALNKL
0401: CQSRIGYARE EKDKSTDWEA IWAYALGPEP ELVLALRMAL DDNHASVVIA CVKVIQCLLS CSLNENFFNI LENMGPHGKD IFTASVFRSK PEIDLGFLRG
0501: CYWKYSAKPS NIVAFREEIL DDGTEDTDTI QKDVFVAGQD VAAGLVRMDI LPRIYHLLET EPTAALEDSI ISVTIAIARH SPKCTTAILK YPKFVQTIVK
0601: RFQLNKRMDV LSSQINSVRL LKVLARYDQS TCMEFVKNGT FNAVTWHLFQ FTSSLDSWVK LGKQNCKLSS TLMVEQLRFW KVCIHSGCCV SRFPELFPAL
0701: CLWLSCPSFE KLREKNLISE FTSVSNEAYL VLEAFAETLP NMYSQNIPRN ESGTWDWSYV SPMIDSALSW ITLAPQLLKW EKGIESVSVS TTTLLWLYSG
0801: VMRTISKVLE KISAEGEEEP LPWLPEFVPK IGLAIIKHKL LSFSVADVSR FGKDSSRCSS FMEYLCFLRE RSQDDELALA SVNCLHGLTR TIVSIQNLIE
0901: SARSKMKAPH QVSISTGDES VLANGILAES LAELTSVSCS FRDSVSSEWP IVQSIELHKR GGLAPGVGLG WGASGGGFWS TRVLLAQAGA GLLSLFLNIS
1001: LSDSQNDQGS VGFMDKVNSA LAMCLIAGPR DYLLVERAFE YVLRPHALEH LACCIKSNKK NISFEWECSE GDYHRMSSML ASHFRHRWLQ QKGRSIAEEG
1101: VSGVRKGTVG LETIHEDGEM SNSSTQDKKS DSSTIEWAHQ RMPLPPHWFL SAISAVHSGK TSTGPPESTE LLEVAKAGVF FLAGLESSSG FGSLPSPVVS
1201: VPLVWKFHAL STVLLVGMDI IEDKNTRNLY NYLQELYGQF LDEARLNHRD TELLRFKSDI HENYSTFLEM VVEQYAAVSY GDVVYGRQVS VYLHQCVEHS
1301: VRLSAWTVLS NARVLELLPS LDKCLGEADG YLEPVEENEA VLEAYLKSWT CGALDRAATR GSVAYTLVVH HFSSLVFCNQ AKDKVSLRNK IVKTLVRDLS
1401: RKRHREGMML DLLRYKKGSA NAMEEEVIAA ETEKRMEVLK EGCEGNSTLL LELEKLKSAA LCGRR
0101: RKEKKDMDLG RWKDMVSGDD PASTHVPQQS RKLKIIETRP PYVASADAAT TSSNTLLAAR ASDQREFVSD KAPFIKNLGT KERVPLNASP PLAVSNGLGT
0201: RHASSSLESD IDVENHAKLQ TMSPDEIAEA QAELLDKMDP ALLSILKKRG EAKLKKRKHS VQGVSITDET AKNSRTEGHF VTPKVMAIPK EKSVVQKPGI
0301: AQGFVWDAWT ERVEAARDLR FSFDGNVVEE DVVSPAETGG KWSGVESAAE RDFLRTEGDP GAAGYTIKEA IALARSVIPG QRCLALHLLA SVLDKALNKL
0401: CQSRIGYARE EKDKSTDWEA IWAYALGPEP ELVLALRMAL DDNHASVVIA CVKVIQCLLS CSLNENFFNI LENMGPHGKD IFTASVFRSK PEIDLGFLRG
0501: CYWKYSAKPS NIVAFREEIL DDGTEDTDTI QKDVFVAGQD VAAGLVRMDI LPRIYHLLET EPTAALEDSI ISVTIAIARH SPKCTTAILK YPKFVQTIVK
0601: RFQLNKRMDV LSSQINSVRL LKVLARYDQS TCMEFVKNGT FNAVTWHLFQ FTSSLDSWVK LGKQNCKLSS TLMVEQLRFW KVCIHSGCCV SRFPELFPAL
0701: CLWLSCPSFE KLREKNLISE FTSVSNEAYL VLEAFAETLP NMYSQNIPRN ESGTWDWSYV SPMIDSALSW ITLAPQLLKW EKGIESVSVS TTTLLWLYSG
0801: VMRTISKVLE KISAEGEEEP LPWLPEFVPK IGLAIIKHKL LSFSVADVSR FGKDSSRCSS FMEYLCFLRE RSQDDELALA SVNCLHGLTR TIVSIQNLIE
0901: SARSKMKAPH QVSISTGDES VLANGILAES LAELTSVSCS FRDSVSSEWP IVQSIELHKR GGLAPGVGLG WGASGGGFWS TRVLLAQAGA GLLSLFLNIS
1001: LSDSQNDQGS VGFMDKVNSA LAMCLIAGPR DYLLVERAFE YVLRPHALEH LACCIKSNKK NISFEWECSE GDYHRMSSML ASHFRHRWLQ QKGRSIAEEG
1101: VSGVRKGTVG LETIHEDGEM SNSSTQDKKS DSSTIEWAHQ RMPLPPHWFL SAISAVHSGK TSTGPPESTE LLEVAKAGVF FLAGLESSSG FGSLPSPVVS
1201: VPLVWKFHAL STVLLVGMDI IEDKNTRNLY NYLQELYGQF LDEARLNHRD TELLRFKSDI HENYSTFLEM VVEQYAAVSY GDVVYGRQVS VYLHQCVEHS
1301: VRLSAWTVLS NARVLELLPS LDKCLGEADG YLEPVEENEA VLEAYLKSWT CGALDRAATR GSVAYTLVVH HFSSLVFCNQ AKDKVSLRNK IVKTLVRDLS
1401: RKRHREGMML DLLRYKKGSA NAMEEEVIAA ETEKRMEVLK EGCEGNSTLL LELEKLKSAA LCGRR
Arabidopsis Description
IYOTranscriptional elongation regulator MINIYO [Source:UniProtKB/Swiss-Prot;Acc:Q8GYU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.