Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G263600.1 | Wheat | nucleus | 95.66 | 96.23 |
| TraesCS7A01G364300.1 | Wheat | nucleus | 95.53 | 95.59 |
| HORVU7Hr1G086420.15 | Barley | cytosol, mitochondrion | 91.58 | 90.21 |
| Os06t0574400-01 | Rice | endoplasmic reticulum, plasma membrane | 36.71 | 71.45 |
| EER89976 | Sorghum | cytosol | 71.91 | 70.56 |
| Zm00001d046366_P001 | Maize | cytosol, nucleus, plasma membrane, plastid | 70.26 | 69.4 |
| Os06t0574450-00 | Rice | nucleus | 20.66 | 67.67 |
| GSMUA_Achr6P00840_001 | Banana | cytosol | 38.68 | 48.88 |
| VIT_03s0038g03100.t01 | Wine grape | nucleus | 42.83 | 40.64 |
| AT4G38440.1 | Thale cress | nucleus | 38.49 | 39.93 |
| KRH70967 | Soybean | nucleus | 40.79 | 38.77 |
| Solyc01g111910.2.1 | Tomato | nucleus | 39.14 | 38.24 |
| KRH75108 | Soybean | golgi, mitochondrion, nucleus, plasma membrane | 40.86 | 37.66 |
| CDY36825 | Canola | cytosol | 36.51 | 32.46 |
| CDY44583 | Canola | cytosol, nucleus, plasma membrane, plastid | 36.51 | 32.4 |
| Bra025599.1-P | Field mustard | cytosol, nucleus, plasma membrane, plastid | 36.18 | 32.16 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G358700.1 | EnsemblPlantsGene:TraesCS7D01G358700 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030154 | InterPro:ARM-type_fold |
| InterPro:RNA_pol_II_AP1_C | InterPro:RNA_pol_II_AP1_N | PANTHER:PTHR21483 | PFAM:PF08620 | PFAM:PF08621 | SEG:seg |
| SUPFAM:SSF48371 | MapMan:15.3.6.5 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:461578017..461586604
Molecular Weight (calculated)
167673.0 Da
IEP (calculated)
6.321
GRAVY (calculated)
-0.212
Length
1520 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEDATKRRHQ PGALPARRKV VEEPFDPPPP PPAAAAAAAT VASPAHLVGA IVEKGFSAAA PSSAPRPTVL PFPVARHRSH GPHWKPVAKA ADKKKGEGEG
0101: EEEDYGMDVD EMDYQPAAAV AGPVRRKEKK GMDFSRWREF VADDVPPKRR QAKKDNIKKI DHVAEVKNVQ VGERGLGGDG MELDGGNGRE ALGSTGLVSD
0201: VSSKKLMNAG DASVTEGGAG VAELRGEGMQ LDDGEPSIAA EINAENTARL AGMSAEEIAE AQADILNRMD PALVEVLRRR GREKSGGKKD EGKDKSRQTS
0301: GPRKTAKAIP GEHLTAGEQS AHSWKAWSER VERIRSCRFA LDGDILGFQS SQEQPDGKKT HGESVAERDF LRTEGDPAAV GYTINEALAL TRSMVPGQRV
0401: LGLQLLASVL NRALHNLHKM DLADNVEGAN SEKAYDWQAV WAYALGPEPE LVLSLRMALD DNHESVVLTC AKVINVMLSY DMNGSYFDFS EKLINKTEDI
0501: CTAPVFRSKP DVDGGFLEGG FWKYNTKPSN ILPHYGEDDE EESDEKHTIQ DDVIVSGQDV AAGLIRMGIL PRICSLLEMD PPQIQKDYLV SILVALARHS
0601: PQSADAILNC TKLVQCVLKL LDRQGSTEIH SSMIRGVTLL KVLSKYNRQT CLNFVNNGVF HQAMWQWYLP AYTLKDWIKP GKEQCKLSSA MMVEQLRFWR
0701: TCISYGFCIS HFTDFFPVLC LWLSPPVFQN LSEHNVLTEF SSIARESFLV LGALAQRLPL LHSVEQFGKQ DMGVPGSYGE MWSWSHVVPM VNSALSWLHL
0801: NDIPYLCSLI NGQSENTTHT PEQSCLVLLI SSVLGMLNST LERISPEGTP DSRSYCLPWI PDFVPKIGLG IITNGFFSFS CTEVVGHEEQ LPSRGVSLVQ
0901: GLCHLRCWGD VDASLSSISC LQRLVQLSCS VDRVIQRATT NSSEHLKESK AGLAGKILQE GISSLWHNDL LNFLTSLLPL ISSQWPVLKN IEMFGRGGLA
1001: PGVGFGWGTC GGGFWSLKCL LAQLDSQLVL ELIKIVSAVP EGLVTLSKGA NSDNVTNPFA NASERISPVL GVSLIAGPGQ ISTLERAFDI LFQPSVLKCL
1101: KSSMHCLASQ MKLPKTFEWD ITEDEYQHFS SVLNSHFRSR WLAIKKKNPD KHARNNSAIN KPKVPETLET IQEEMELTEV VNPPCSTLVL EWAHQRLPLP
1201: AHWILSSICC SDDADVSRAG LIFLLGLEAV SAAPSLDVPL VWKMHALSAS VRTNMDLLQE DRSKDVFEAL QELYGKHLDI LCQKYYRSRS VNNDEVVRSV
1301: ATVEEVKVIS THEILRFKEK IHESYTTFVE SVVDQFAAVS YGDVIFGRQV AIYLHRSVET TVRLAAWNAL STAYVLELLP PLDKCIGDVK GYLEPLEDDE
1401: GILEAYAKSW TSGILDKAAR RDSMSFTLAK HHLSGFVFRR SASVKVRNKM VKSLLRCYSQ KQHHEAMLQS LVLQGVPRDS QYGSEVGRRI EILKDACEMN
1501: SSLLAEVQRL KTSIEGAIIS
0101: EEEDYGMDVD EMDYQPAAAV AGPVRRKEKK GMDFSRWREF VADDVPPKRR QAKKDNIKKI DHVAEVKNVQ VGERGLGGDG MELDGGNGRE ALGSTGLVSD
0201: VSSKKLMNAG DASVTEGGAG VAELRGEGMQ LDDGEPSIAA EINAENTARL AGMSAEEIAE AQADILNRMD PALVEVLRRR GREKSGGKKD EGKDKSRQTS
0301: GPRKTAKAIP GEHLTAGEQS AHSWKAWSER VERIRSCRFA LDGDILGFQS SQEQPDGKKT HGESVAERDF LRTEGDPAAV GYTINEALAL TRSMVPGQRV
0401: LGLQLLASVL NRALHNLHKM DLADNVEGAN SEKAYDWQAV WAYALGPEPE LVLSLRMALD DNHESVVLTC AKVINVMLSY DMNGSYFDFS EKLINKTEDI
0501: CTAPVFRSKP DVDGGFLEGG FWKYNTKPSN ILPHYGEDDE EESDEKHTIQ DDVIVSGQDV AAGLIRMGIL PRICSLLEMD PPQIQKDYLV SILVALARHS
0601: PQSADAILNC TKLVQCVLKL LDRQGSTEIH SSMIRGVTLL KVLSKYNRQT CLNFVNNGVF HQAMWQWYLP AYTLKDWIKP GKEQCKLSSA MMVEQLRFWR
0701: TCISYGFCIS HFTDFFPVLC LWLSPPVFQN LSEHNVLTEF SSIARESFLV LGALAQRLPL LHSVEQFGKQ DMGVPGSYGE MWSWSHVVPM VNSALSWLHL
0801: NDIPYLCSLI NGQSENTTHT PEQSCLVLLI SSVLGMLNST LERISPEGTP DSRSYCLPWI PDFVPKIGLG IITNGFFSFS CTEVVGHEEQ LPSRGVSLVQ
0901: GLCHLRCWGD VDASLSSISC LQRLVQLSCS VDRVIQRATT NSSEHLKESK AGLAGKILQE GISSLWHNDL LNFLTSLLPL ISSQWPVLKN IEMFGRGGLA
1001: PGVGFGWGTC GGGFWSLKCL LAQLDSQLVL ELIKIVSAVP EGLVTLSKGA NSDNVTNPFA NASERISPVL GVSLIAGPGQ ISTLERAFDI LFQPSVLKCL
1101: KSSMHCLASQ MKLPKTFEWD ITEDEYQHFS SVLNSHFRSR WLAIKKKNPD KHARNNSAIN KPKVPETLET IQEEMELTEV VNPPCSTLVL EWAHQRLPLP
1201: AHWILSSICC SDDADVSRAG LIFLLGLEAV SAAPSLDVPL VWKMHALSAS VRTNMDLLQE DRSKDVFEAL QELYGKHLDI LCQKYYRSRS VNNDEVVRSV
1301: ATVEEVKVIS THEILRFKEK IHESYTTFVE SVVDQFAAVS YGDVIFGRQV AIYLHRSVET TVRLAAWNAL STAYVLELLP PLDKCIGDVK GYLEPLEDDE
1401: GILEAYAKSW TSGILDKAAR RDSMSFTLAK HHLSGFVFRR SASVKVRNKM VKSLLRCYSQ KQHHEAMLQS LVLQGVPRDS QYGSEVGRRI EILKDACEMN
1501: SSLLAEVQRL KTSIEGAIIS
0001: MEQSSGRVNP EQPNNVLASL VGSIVEKGIS ENKPPSKPLP PRPSLLSFPV ARHRSHGPHL APVGSSIAQP KDYNDDQEEE EAEERFMNAD SIAAFAKPLQ
0101: RKEKKDMDLG RWKDMVSGDD PASTHVPQQS RKLKIIETRP PYVASADAAT TSSNTLLAAR ASDQREFVSD KAPFIKNLGT KERVPLNASP PLAVSNGLGT
0201: RHASSSLESD IDVENHAKLQ TMSPDEIAEA QAELLDKMDP ALLSILKKRG EAKLKKRKHS VQGVSITDET AKNSRTEGHF VTPKVMAIPK EKSVVQKPGI
0301: AQGFVWDAWT ERVEAARDLR FSFDGNVVEE DVVSPAETGG KWSGVESAAE RDFLRTEGDP GAAGYTIKEA IALARSVIPG QRCLALHLLA SVLDKALNKL
0401: CQSRIGYARE EKDKSTDWEA IWAYALGPEP ELVLALRMAL DDNHASVVIA CVKVIQCLLS CSLNENFFNI LENMGPHGKD IFTASVFRSK PEIDLGFLRG
0501: CYWKYSAKPS NIVAFREEIL DDGTEDTDTI QKDVFVAGQD VAAGLVRMDI LPRIYHLLET EPTAALEDSI ISVTIAIARH SPKCTTAILK YPKFVQTIVK
0601: RFQLNKRMDV LSSQINSVRL LKVLARYDQS TCMEFVKNGT FNAVTWHLFQ FTSSLDSWVK LGKQNCKLSS TLMVEQLRFW KVCIHSGCCV SRFPELFPAL
0701: CLWLSCPSFE KLREKNLISE FTSVSNEAYL VLEAFAETLP NMYSQNIPRN ESGTWDWSYV SPMIDSALSW ITLAPQLLKW EKGIESVSVS TTTLLWLYSG
0801: VMRTISKVLE KISAEGEEEP LPWLPEFVPK IGLAIIKHKL LSFSVADVSR FGKDSSRCSS FMEYLCFLRE RSQDDELALA SVNCLHGLTR TIVSIQNLIE
0901: SARSKMKAPH QVSISTGDES VLANGILAES LAELTSVSCS FRDSVSSEWP IVQSIELHKR GGLAPGVGLG WGASGGGFWS TRVLLAQAGA GLLSLFLNIS
1001: LSDSQNDQGS VGFMDKVNSA LAMCLIAGPR DYLLVERAFE YVLRPHALEH LACCIKSNKK NISFEWECSE GDYHRMSSML ASHFRHRWLQ QKGRSIAEEG
1101: VSGVRKGTVG LETIHEDGEM SNSSTQDKKS DSSTIEWAHQ RMPLPPHWFL SAISAVHSGK TSTGPPESTE LLEVAKAGVF FLAGLESSSG FGSLPSPVVS
1201: VPLVWKFHAL STVLLVGMDI IEDKNTRNLY NYLQELYGQF LDEARLNHRD TELLRFKSDI HENYSTFLEM VVEQYAAVSY GDVVYGRQVS VYLHQCVEHS
1301: VRLSAWTVLS NARVLELLPS LDKCLGEADG YLEPVEENEA VLEAYLKSWT CGALDRAATR GSVAYTLVVH HFSSLVFCNQ AKDKVSLRNK IVKTLVRDLS
1401: RKRHREGMML DLLRYKKGSA NAMEEEVIAA ETEKRMEVLK EGCEGNSTLL LELEKLKSAA LCGRR
0101: RKEKKDMDLG RWKDMVSGDD PASTHVPQQS RKLKIIETRP PYVASADAAT TSSNTLLAAR ASDQREFVSD KAPFIKNLGT KERVPLNASP PLAVSNGLGT
0201: RHASSSLESD IDVENHAKLQ TMSPDEIAEA QAELLDKMDP ALLSILKKRG EAKLKKRKHS VQGVSITDET AKNSRTEGHF VTPKVMAIPK EKSVVQKPGI
0301: AQGFVWDAWT ERVEAARDLR FSFDGNVVEE DVVSPAETGG KWSGVESAAE RDFLRTEGDP GAAGYTIKEA IALARSVIPG QRCLALHLLA SVLDKALNKL
0401: CQSRIGYARE EKDKSTDWEA IWAYALGPEP ELVLALRMAL DDNHASVVIA CVKVIQCLLS CSLNENFFNI LENMGPHGKD IFTASVFRSK PEIDLGFLRG
0501: CYWKYSAKPS NIVAFREEIL DDGTEDTDTI QKDVFVAGQD VAAGLVRMDI LPRIYHLLET EPTAALEDSI ISVTIAIARH SPKCTTAILK YPKFVQTIVK
0601: RFQLNKRMDV LSSQINSVRL LKVLARYDQS TCMEFVKNGT FNAVTWHLFQ FTSSLDSWVK LGKQNCKLSS TLMVEQLRFW KVCIHSGCCV SRFPELFPAL
0701: CLWLSCPSFE KLREKNLISE FTSVSNEAYL VLEAFAETLP NMYSQNIPRN ESGTWDWSYV SPMIDSALSW ITLAPQLLKW EKGIESVSVS TTTLLWLYSG
0801: VMRTISKVLE KISAEGEEEP LPWLPEFVPK IGLAIIKHKL LSFSVADVSR FGKDSSRCSS FMEYLCFLRE RSQDDELALA SVNCLHGLTR TIVSIQNLIE
0901: SARSKMKAPH QVSISTGDES VLANGILAES LAELTSVSCS FRDSVSSEWP IVQSIELHKR GGLAPGVGLG WGASGGGFWS TRVLLAQAGA GLLSLFLNIS
1001: LSDSQNDQGS VGFMDKVNSA LAMCLIAGPR DYLLVERAFE YVLRPHALEH LACCIKSNKK NISFEWECSE GDYHRMSSML ASHFRHRWLQ QKGRSIAEEG
1101: VSGVRKGTVG LETIHEDGEM SNSSTQDKKS DSSTIEWAHQ RMPLPPHWFL SAISAVHSGK TSTGPPESTE LLEVAKAGVF FLAGLESSSG FGSLPSPVVS
1201: VPLVWKFHAL STVLLVGMDI IEDKNTRNLY NYLQELYGQF LDEARLNHRD TELLRFKSDI HENYSTFLEM VVEQYAAVSY GDVVYGRQVS VYLHQCVEHS
1301: VRLSAWTVLS NARVLELLPS LDKCLGEADG YLEPVEENEA VLEAYLKSWT CGALDRAATR GSVAYTLVVH HFSSLVFCNQ AKDKVSLRNK IVKTLVRDLS
1401: RKRHREGMML DLLRYKKGSA NAMEEEVIAA ETEKRMEVLK EGCEGNSTLL LELEKLKSAA LCGRR
Arabidopsis Description
IYOTranscriptional elongation regulator MINIYO [Source:UniProtKB/Swiss-Prot;Acc:Q8GYU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.