Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plasma membrane 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G358700.1 | Wheat | nucleus | 67.67 | 20.66 |
| TraesCS7A01G364300.1 | Wheat | nucleus | 66.38 | 20.28 |
| TraesCS7B01G263600.1 | Wheat | nucleus | 65.95 | 20.25 |
| EER89976 | Sorghum | cytosol | 67.24 | 20.14 |
| Zm00001d046366_P001 | Maize | cytosol, nucleus, plasma membrane, plastid | 65.95 | 19.88 |
| HORVU7Hr1G086420.15 | Barley | cytosol, mitochondrion | 62.07 | 18.66 |
| AT4G38440.1 | Thale cress | nucleus | 32.76 | 10.38 |
| VIT_03s0038g03100.t01 | Wine grape | nucleus | 35.13 | 10.17 |
| KRH70967 | Soybean | nucleus | 33.41 | 9.69 |
| Solyc01g111910.2.1 | Tomato | nucleus | 32.33 | 9.64 |
| KRH75108 | Soybean | golgi, mitochondrion, nucleus, plasma membrane | 33.62 | 9.46 |
| CDY36825 | Canola | cytosol | 26.94 | 7.31 |
| Bra025599.1-P | Field mustard | cytosol, nucleus, plasma membrane, plastid | 25.86 | 7.02 |
| CDY44583 | Canola | cytosol, nucleus, plasma membrane, plastid | 25.86 | 7.01 |
| GSMUA_Achr6P00840_001 | Banana | cytosol | 14.87 | 5.74 |
| Os06t0574400-01 | Rice | endoplasmic reticulum, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os06t0574450-00 | EnsemblPlantsGene:Os06g0574450 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:RNA_pol_II_AP1_C | InterPro:RNA_pol_II_AP1_N | PANTHER:PTHR21483 | PFAM:PF08620 | PFAM:PF08621 | ProteinID:BAS98341.1 |
| SEG:seg | UniParc:UPI000393BD14 | UniProt:A0A0P0WY77 | MapMan:35.1 | : | : |
Description
Hypothetical conserved gene. (Os06t0574450-00)
Coordinates
chr6:-:22299146..22301030
Molecular Weight (calculated)
50118.1 Da
IEP (calculated)
6.812
GRAVY (calculated)
-0.686
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDAAERRRR QQQQQQPGAA HPARRKVVEE PFDPSPPPAA AVAPPSSRLV GAIVEKGFSS GAAAAAPSSA PSPTVLPFPV ARHRSHGPHW KPAARDAAMA
101: EGEGEEEEGM DVDETDYQPV AAAAGPVKRK EKKGMDFSRW REFVADDAPP KRRQAKPLQP KKQTAQKIDT GVVAATTGGT AQEKRSGGIG MQLEVGNGKE
201: ELGGAALMSD VAPRKPMKQV DARDDVRNVE LRGEGMESDN GEPSLTAEIN AENMARLAGM SAGEIAEAQA EILNRMDPAF VEMLKRRGKE KSGSRKDGGK
301: GKGGGISGPG KISKAMPGEW LSAGEHSGHT WKAWSERVER IRSCRFTLEG DILGFQSCQE QQHGKKAHVE TVGERDFLRT EGDPAAVGYT INEAVALSRS
401: MVPGQRVLAL QLLALILNRA LQNLHKTDLI DNFKESNDDD KFNDWQAVWA YAIGPEPELV LSLR
101: EGEGEEEEGM DVDETDYQPV AAAAGPVKRK EKKGMDFSRW REFVADDAPP KRRQAKPLQP KKQTAQKIDT GVVAATTGGT AQEKRSGGIG MQLEVGNGKE
201: ELGGAALMSD VAPRKPMKQV DARDDVRNVE LRGEGMESDN GEPSLTAEIN AENMARLAGM SAGEIAEAQA EILNRMDPAF VEMLKRRGKE KSGSRKDGGK
301: GKGGGISGPG KISKAMPGEW LSAGEHSGHT WKAWSERVER IRSCRFTLEG DILGFQSCQE QQHGKKAHVE TVGERDFLRT EGDPAAVGYT INEAVALSRS
401: MVPGQRVLAL QLLALILNRA LQNLHKTDLI DNFKESNDDD KFNDWQAVWA YAIGPEPELV LSLR
0001: MEQSSGRVNP EQPNNVLASL VGSIVEKGIS ENKPPSKPLP PRPSLLSFPV ARHRSHGPHL APVGSSIAQP KDYNDDQEEE EAEERFMNAD SIAAFAKPLQ
0101: RKEKKDMDLG RWKDMVSGDD PASTHVPQQS RKLKIIETRP PYVASADAAT TSSNTLLAAR ASDQREFVSD KAPFIKNLGT KERVPLNASP PLAVSNGLGT
0201: RHASSSLESD IDVENHAKLQ TMSPDEIAEA QAELLDKMDP ALLSILKKRG EAKLKKRKHS VQGVSITDET AKNSRTEGHF VTPKVMAIPK EKSVVQKPGI
0301: AQGFVWDAWT ERVEAARDLR FSFDGNVVEE DVVSPAETGG KWSGVESAAE RDFLRTEGDP GAAGYTIKEA IALARSVIPG QRCLALHLLA SVLDKALNKL
0401: CQSRIGYARE EKDKSTDWEA IWAYALGPEP ELVLALRMAL DDNHASVVIA CVKVIQCLLS CSLNENFFNI LENMGPHGKD IFTASVFRSK PEIDLGFLRG
0501: CYWKYSAKPS NIVAFREEIL DDGTEDTDTI QKDVFVAGQD VAAGLVRMDI LPRIYHLLET EPTAALEDSI ISVTIAIARH SPKCTTAILK YPKFVQTIVK
0601: RFQLNKRMDV LSSQINSVRL LKVLARYDQS TCMEFVKNGT FNAVTWHLFQ FTSSLDSWVK LGKQNCKLSS TLMVEQLRFW KVCIHSGCCV SRFPELFPAL
0701: CLWLSCPSFE KLREKNLISE FTSVSNEAYL VLEAFAETLP NMYSQNIPRN ESGTWDWSYV SPMIDSALSW ITLAPQLLKW EKGIESVSVS TTTLLWLYSG
0801: VMRTISKVLE KISAEGEEEP LPWLPEFVPK IGLAIIKHKL LSFSVADVSR FGKDSSRCSS FMEYLCFLRE RSQDDELALA SVNCLHGLTR TIVSIQNLIE
0901: SARSKMKAPH QVSISTGDES VLANGILAES LAELTSVSCS FRDSVSSEWP IVQSIELHKR GGLAPGVGLG WGASGGGFWS TRVLLAQAGA GLLSLFLNIS
1001: LSDSQNDQGS VGFMDKVNSA LAMCLIAGPR DYLLVERAFE YVLRPHALEH LACCIKSNKK NISFEWECSE GDYHRMSSML ASHFRHRWLQ QKGRSIAEEG
1101: VSGVRKGTVG LETIHEDGEM SNSSTQDKKS DSSTIEWAHQ RMPLPPHWFL SAISAVHSGK TSTGPPESTE LLEVAKAGVF FLAGLESSSG FGSLPSPVVS
1201: VPLVWKFHAL STVLLVGMDI IEDKNTRNLY NYLQELYGQF LDEARLNHRD TELLRFKSDI HENYSTFLEM VVEQYAAVSY GDVVYGRQVS VYLHQCVEHS
1301: VRLSAWTVLS NARVLELLPS LDKCLGEADG YLEPVEENEA VLEAYLKSWT CGALDRAATR GSVAYTLVVH HFSSLVFCNQ AKDKVSLRNK IVKTLVRDLS
1401: RKRHREGMML DLLRYKKGSA NAMEEEVIAA ETEKRMEVLK EGCEGNSTLL LELEKLKSAA LCGRR
0101: RKEKKDMDLG RWKDMVSGDD PASTHVPQQS RKLKIIETRP PYVASADAAT TSSNTLLAAR ASDQREFVSD KAPFIKNLGT KERVPLNASP PLAVSNGLGT
0201: RHASSSLESD IDVENHAKLQ TMSPDEIAEA QAELLDKMDP ALLSILKKRG EAKLKKRKHS VQGVSITDET AKNSRTEGHF VTPKVMAIPK EKSVVQKPGI
0301: AQGFVWDAWT ERVEAARDLR FSFDGNVVEE DVVSPAETGG KWSGVESAAE RDFLRTEGDP GAAGYTIKEA IALARSVIPG QRCLALHLLA SVLDKALNKL
0401: CQSRIGYARE EKDKSTDWEA IWAYALGPEP ELVLALRMAL DDNHASVVIA CVKVIQCLLS CSLNENFFNI LENMGPHGKD IFTASVFRSK PEIDLGFLRG
0501: CYWKYSAKPS NIVAFREEIL DDGTEDTDTI QKDVFVAGQD VAAGLVRMDI LPRIYHLLET EPTAALEDSI ISVTIAIARH SPKCTTAILK YPKFVQTIVK
0601: RFQLNKRMDV LSSQINSVRL LKVLARYDQS TCMEFVKNGT FNAVTWHLFQ FTSSLDSWVK LGKQNCKLSS TLMVEQLRFW KVCIHSGCCV SRFPELFPAL
0701: CLWLSCPSFE KLREKNLISE FTSVSNEAYL VLEAFAETLP NMYSQNIPRN ESGTWDWSYV SPMIDSALSW ITLAPQLLKW EKGIESVSVS TTTLLWLYSG
0801: VMRTISKVLE KISAEGEEEP LPWLPEFVPK IGLAIIKHKL LSFSVADVSR FGKDSSRCSS FMEYLCFLRE RSQDDELALA SVNCLHGLTR TIVSIQNLIE
0901: SARSKMKAPH QVSISTGDES VLANGILAES LAELTSVSCS FRDSVSSEWP IVQSIELHKR GGLAPGVGLG WGASGGGFWS TRVLLAQAGA GLLSLFLNIS
1001: LSDSQNDQGS VGFMDKVNSA LAMCLIAGPR DYLLVERAFE YVLRPHALEH LACCIKSNKK NISFEWECSE GDYHRMSSML ASHFRHRWLQ QKGRSIAEEG
1101: VSGVRKGTVG LETIHEDGEM SNSSTQDKKS DSSTIEWAHQ RMPLPPHWFL SAISAVHSGK TSTGPPESTE LLEVAKAGVF FLAGLESSSG FGSLPSPVVS
1201: VPLVWKFHAL STVLLVGMDI IEDKNTRNLY NYLQELYGQF LDEARLNHRD TELLRFKSDI HENYSTFLEM VVEQYAAVSY GDVVYGRQVS VYLHQCVEHS
1301: VRLSAWTVLS NARVLELLPS LDKCLGEADG YLEPVEENEA VLEAYLKSWT CGALDRAATR GSVAYTLVVH HFSSLVFCNQ AKDKVSLRNK IVKTLVRDLS
1401: RKRHREGMML DLLRYKKGSA NAMEEEVIAA ETEKRMEVLK EGCEGNSTLL LELEKLKSAA LCGRR
Arabidopsis Description
IYOTranscriptional elongation regulator MINIYO [Source:UniProtKB/Swiss-Prot;Acc:Q8GYU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.