Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025176.1-P | Field mustard | cytosol | 63.86 | 55.79 |
| CDX83576 | Canola | extracellular, golgi | 86.75 | 51.43 |
| KRG97470 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 93.98 | 37.68 |
| KRH31421 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 92.77 | 37.2 |
| VIT_01s0010g02430.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 91.57 | 36.72 |
| Solyc05g014370.2.1 | Tomato | mitochondrion | 91.57 | 36.54 |
| PGSC0003DMT400045025 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 91.57 | 36.54 |
| Bra017340.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 89.16 | 35.41 |
| CDY39177 | Canola | cytosol | 89.16 | 35.41 |
| CDY04187 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 89.16 | 35.41 |
| Os04t0486500-01 | Rice | mitochondrion | 87.95 | 35.27 |
| AT3G25980.1 | Thale cress | cytosol | 87.95 | 34.93 |
| EES12410 | Sorghum | mitochondrion | 85.54 | 34.3 |
| Zm00001d025721_P001 | Maize | mitochondrion | 86.75 | 33.49 |
| TraesCS2A01G320000.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 83.13 | 33.33 |
| TraesCS2B01G363300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 83.13 | 33.33 |
| TraesCS2D01G343300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 83.13 | 33.33 |
| HORVU2Hr1G084050.1 | Barley | plastid | 83.13 | 25.37 |
| Zm00001d003249_P001 | Maize | mitochondrion | 73.49 | 12.82 |
| KRH08024 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:13.3.5.5.4 | Gene3D:3.30.900.10 | GO:GO:0000776 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005737 | GO:GO:0005828 | GO:GO:0005856 | GO:GO:0005876 |
| GO:GO:0007049 | GO:GO:0007094 | GO:GO:0007346 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010369 |
| GO:GO:0016043 | EnsemblPlantsGene:GSMUA_Achr6G21190_001 | EnsemblPlants:GSMUA_Achr6P21190_001 | EnsemblPlants:GSMUA_Achr6T21190_001 | InterPro:HORMA_dom | InterPro:HORMA_dom_sf |
| InterPro:IPR003511 | InterPro:IPR036570 | UniProt:M0T8W7 | InterPro:Mad2 | PFscan:PS50815 | PANTHER:PTHR11842 |
| PANTHER:PTHR11842:SF11 | SUPFAM:SSF56019 | UniParc:UPI0002963D5B | : | : | : |
Description
Mitotic spindle checkpoint protein MAD2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G21190_001]
Coordinates
chr6:-:16726092..16726706
Molecular Weight (calculated)
9664.5 Da
IEP (calculated)
4.414
GRAVY (calculated)
-0.247
Length
83 amino acids
Sequence
(BLAST)
(BLAST)
1: MREIQAIMRQ IASSITYLPC LDEPCVFDVL AYTDKDVAVP FTWIESDAKL IKDPQMVKLH SFDTKIHKVD TLVSYKNDDW DEQ
001: MASKTAAAKD IITLHGSAAI VSEFFCYAAN SILYNRAVYP EESFVKVKKY GLPMLLIEDE SVKSFMSNLT SQISEWLEAG KLQRVVLVIM SKATGEVLER
101: WNFRIETDNE VVDKGVSREK SDKEIMREIQ AIMRQVASSV TYLPCLDETC VFDVLAYTDT DVAVPFTWIE SDPKLIANPQ MVKLHGFDTK IHKVDTLVSY
201: KNDEWDEEE
101: WNFRIETDNE VVDKGVSREK SDKEIMREIQ AIMRQVASSV TYLPCLDETC VFDVLAYTDT DVAVPFTWIE SDPKLIANPQ MVKLHGFDTK IHKVDTLVSY
201: KNDEWDEEE
Arabidopsis Description
MAD2Mitotic spindle checkpoint protein MAD2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU93]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.