Factsheet for GSMUA_Achr9P23650_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G007020.2	Barley	cytosol, plastid	54.7	56.17
TraesCS6A01G037800.1	Wheat	cytosol, nucleus, peroxisome, plastid	56.45	55.29
Zm00001d014988_P001	Maize	plastid	54.53	54.91
Os02t0114700-01	Rice	cytosol	55.05	54.86
TraesCS6B01G053000.1	Wheat	plastid	56.1	54.86
EES04356	Sorghum	plastid	55.57	54.81
TraesCS6D01G043500.1	Wheat	cytosol, nucleus, peroxisome, plastid	56.1	54.67
VIT_02s0025g03690.t01	Wine grape	cytosol	59.76	54.19
CDY39753	Canola	cytosol	50.7	53.79
CDY46387	Canola	cytosol	50.35	53.22
Zm00001d054047_P001	Maize	cytosol, plastid	53.83	53.09
CDX67491	Canola	cytosol	50.35	51.79
Bra025513.1-P	Field mustard	cytosol	50.7	50.79
Bra028490.1-P	Field mustard	cytosol, plastid	49.83	49.65
PGSC0003DMT400076613	Potato	plastid	55.05	49.38
KRH59854	Soybean	nucleus, plastid	54.18	49.21
AT5G41190.1	Thale cress	cytosol	51.39	49.0
KRH41155	Soybean	nucleus	53.66	48.58
Solyc08g007990.2.1	Tomato	plastid	52.96	47.35
PGSC0003DMT400014917	Potato	plastid	52.79	47.2
CDY66426	Canola	cytosol, plastid	31.88	39.02
CDY25417	Canola	endoplasmic reticulum, extracellular	25.78	23.76

Protein Annotations

MapMan:17.1.1.8.3	MapMan:17.1.3.2.1.6	Gene3D:3.30.40.120	Gene3D:3.40.50.1010	GO:GO:0000469	GO:GO:0003674
GO:GO:0003824	GO:GO:0004518	GO:GO:0004521	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006364	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009553	GO:GO:0009555	GO:GO:0009987	GO:GO:0016787	GO:GO:0042274
GO:GO:0046872	GO:GO:0090502	EnsemblPlantsGene:GSMUA_Achr9G23650_001	EnsemblPlants:GSMUA_Achr9P23650_001	EnsemblPlants:GSMUA_Achr9T23650_001	InterPro:IPR036283
UniProt:M0U2X2	InterPro:NOB1_Zf-like_sf	InterPro:NOB1_Zn-bd	InterPro:Nob1_euk	PFAM:PF08772	PFAM:PF17146
PIRSF:PIRSF037125	PANTHER:PTHR12814	InterPro:Ribonuclease_PIN	SUPFAM:SSF144206	UniParc:UPI0002957AF8	SEG:seg

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G23650_001]

Coordinates

chr9:+:28479043..28484514

Molecular Weight (calculated)

63875.1 Da

IEP (calculated)

5.539

GRAVY (calculated)

-0.661

Length

574 amino acids

Sequence
(BLAST)

001: METESPQSSP PPTPPVATVN PPARPVCWTE VVQKNLTPQP QETISNRVFG SCTSSKGISV AVVDANALIH GDKLAGYADK FVSVPEVLEE VRDPVSRQRL
101: SFLPFPVETM EPSPEFLNKV VKFSRETGDL HTLSDVDLKL IALAYMLEAQ IHGTDHLRDR PPPLHVVDVK NLPEAQMPGW GSNVPNLAEW EALEQATEGG
201: TNHNSRILAL KDLNDQVEPE NRSGPKPNEQ DDEHTSFTGI DASQGENTEN ADDWLPAVSR STHRRYLRRK ARRELSKASE ENRHPSSSRE ADTEISEGNN
301: GGVEDVKLNF DTLQPLQEEK EDDILRTVIG SDHTAIEEDS SGNVHDFFQG EEINEFSKEL DSLELNSQSD GSIDTADIDD ESSEQSWMLK SLSESSVACV
401: TSDYAMQNVI LQIGLRLLAP GGMQIRQMHR WVLKCHACNN VTQEIGRIFC PKCGSGGTLR KVSVTVGENG IIMASRRPRI ILRGTKFSLP LPKGGREAVA
501: KNLILREDQL PHKLLYPKSK KKTNKQDEDF LSVDDIFSHS GEKRVPLKPP VKKALAMFSG RRNPNDNHFS RRKR

Best Arabidopsis Sequence Match ( AT5G41190.1 )
(BLAST)

001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH

Arabidopsis Description

RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.