CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41155	Soybean	nucleus	90.19	89.91
VIT_02s0025g03690.t01	Wine grape	cytosol	61.39	61.3
CDY39753	Canola	cytosol	50.79	59.33
CDY46387	Canola	cytosol	50.95	59.3
Bra025513.1-P	Field mustard	cytosol	53.16	58.64
PGSC0003DMT400076613	Potato	plastid	58.39	57.66
CDX67491	Canola	cytosol	49.68	56.27
AT5G41190.1	Thale cress	cytosol	53.48	56.15
Bra028490.1-P	Field mustard	cytosol, plastid	50.95	55.9
Solyc08g007990.2.1	Tomato	plastid	56.49	55.61
PGSC0003DMT400014917	Potato	plastid	56.33	55.45
GSMUA_Achr9P23650_001	Banana	cytosol	49.21	54.18
Os02t0114700-01	Rice	cytosol	46.36	50.87
HORVU6Hr1G007020.2	Barley	cytosol, plastid	44.15	49.91
EES04356	Sorghum	plastid	45.09	48.97
Zm00001d014988_P001	Maize	plastid	44.15	48.95
TraesCS6A01G037800.1	Wheat	cytosol, nucleus, peroxisome, plastid	44.78	48.29
TraesCS6B01G053000.1	Wheat	plastid	44.78	48.21
TraesCS6D01G043500.1	Wheat	cytosol, nucleus, peroxisome, plastid	44.62	47.88
Zm00001d054047_P001	Maize	cytosol, plastid	43.35	47.08
CDY66426	Canola	cytosol, plastid	34.18	46.06
CDY25417	Canola	endoplasmic reticulum, extracellular	26.58	26.97

Protein Annotations

EntrezGene:100800291	MapMan:17.1.1.8.3	MapMan:17.1.3.2.1.6	Gene3D:3.30.40.120	Gene3D:3.40.50.1010	EMBL:ACUP02003342
EnsemblPlantsGene:GLYMA_05G206400	GO:GO:0000469	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0004521
GO:GO:0005575	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0030490	GO:GO:0030688	GO:GO:0090502	UniProt:I1K6K5	InterPro:IPR036283	EnsemblPlants:KRH59854
ProteinID:KRH59854	ProteinID:KRH59854.1	InterPro:NOB1_Zf-like_sf	InterPro:NOB1_Zn-bd	PFAM:PF08772	PFAM:PF17146
PANTHER:PTHR12814	InterPro:Ribonuclease_PIN	SUPFAM:SSF144206	UniParc:UPI000233986B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:-:38922576..38925697

Molecular Weight (calculated)

69989.1 Da

IEP (calculated)

5.018

GRAVY (calculated)

-0.618

Length

632 amino acids

Sequence
(BLAST)

001: MEEAPSSVPA TASCWSNVVK KQPPPPPPQQ HTERVLVETS ESPNAISVAV VDANAVIQSG EKLHGLADKF ISIPEVMEEI RDPVSRHKLS FLPFTIQTME
101: PSPESINKVV KFARATGDLQ TLSDVDIKLI ALTYTLEAQI HGTKHLREAP PPVQMVNVKR LPEKDLPGWG SNVPNLDEWE ALEQTEDVSN SNSRILPLQD
201: LSLNIVSHDE HFVDGSVERA SEADSGIQEG DQNGSMKPRR YLPKKKEINI EGKMMVADGI DASQGEVDDS AGDWMPAVSR STHRRYLRRK ARREYHELLS
301: SNQDQQQLEG NVDGSVGEDA SALNQPAHHN EEQHIENAVT EDDNVVKENK DNESIYEIMQ QMRLQEGSLE VLDEESKPSS SPEELQSDNA GLVETASDGN
401: ATVVNKLCDS RIDTIDGQSN QLEIASQTSE AADFSYADDD DSDQSWMVRS LSESSVACIT GDFAMQNVLL QMGLRLLAPG GTQIHQLHRW ILKCHACNTV
501: TAEIGRIFCP KCGNGGTLRK VAVTVNENGI VLAARRPRVT LRGTKFSLPL PQGGRDAVTK NLILREDQLP QRVLYPKMKK ANKQDDDFFT PDSVFSHHID
601: KKAPFQPPVR KAMAVFSGRR NPNDNHYSRS KA

Best Arabidopsis Sequence Match ( AT5G41190.1 )
(BLAST)

001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH

Arabidopsis Description

RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.