Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46387 | Canola | cytosol | 73.75 | 81.77 |
| CDY39753 | Canola | cytosol | 72.92 | 81.15 |
| Bra025513.1-P | Field mustard | cytosol | 76.91 | 80.8 |
| CDY66426 | Canola | cytosol, plastid | 48.01 | 61.62 |
| VIT_02s0025g03690.t01 | Wine grape | cytosol | 61.3 | 58.29 |
| PGSC0003DMT400076613 | Potato | plastid | 58.14 | 54.69 |
| KRH59854 | Soybean | nucleus, plastid | 56.15 | 53.48 |
| KRH41155 | Soybean | nucleus | 56.31 | 53.47 |
| Solyc08g007990.2.1 | Tomato | plastid | 56.31 | 52.8 |
| PGSC0003DMT400014917 | Potato | plastid | 55.65 | 52.18 |
| GSMUA_Achr9P23650_001 | Banana | cytosol | 49.0 | 51.39 |
| HORVU6Hr1G007020.2 | Barley | cytosol, plastid | 45.51 | 49.02 |
| TraesCS6D01G043500.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 46.18 | 47.2 |
| Os02t0114700-01 | Rice | cytosol | 44.85 | 46.88 |
| TraesCS6B01G053000.1 | Wheat | plastid | 45.51 | 46.68 |
| TraesCS6A01G037800.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 45.35 | 46.59 |
| EES04356 | Sorghum | plastid | 44.19 | 45.7 |
| Zm00001d014988_P001 | Maize | plastid | 43.19 | 45.61 |
| Zm00001d054047_P001 | Maize | cytosol, plastid | 42.36 | 43.81 |
Protein Annotations
| MapMan:17.1.1.8.3 | MapMan:17.1.3.2.1.6 | Gene3D:3.30.40.120 | Gene3D:3.40.50.1010 | EntrezGene:834121 | ProteinID:AED94652.1 |
| ArrayExpress:AT5G41190 | EnsemblPlantsGene:AT5G41190 | RefSeq:AT5G41190 | TAIR:AT5G41190 | RefSeq:AT5G41190-TAIR-G | EnsemblPlants:AT5G41190.1 |
| TAIR:AT5G41190.1 | Unigene:At.51074 | ProteinID:BAB09721.1 | ncoils:Coil | GO:GO:0000469 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004521 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009553 | GO:GO:0009555 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0030490 |
| GO:GO:0030688 | GO:GO:0042274 | GO:GO:0046872 | GO:GO:0090502 | InterPro:IPR036283 | InterPro:NOB1_Zf-like_sf |
| InterPro:NOB1_Zn-bd | RefSeq:NP_198935.1 | InterPro:Nob1_euk | PFAM:PF08772 | PFAM:PF17146 | PIRSF:PIRSF037125 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR12814 |
| UniProt:Q9FLL1 | InterPro:Ribonuclease_PIN | SUPFAM:SSF144206 | UniParc:UPI00000AB4BB | SEG:seg | : |
Description
RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
Coordinates
chr5:-:16487466..16490101
Molecular Weight (calculated)
66728.7 Da
IEP (calculated)
5.571
GRAVY (calculated)
-0.624
Length
602 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.