Factsheet for Zm00001d014988_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d054047_P001	Maize	cytosol, plastid	86.67	84.88
HORVU6Hr1G007020.2	Barley	cytosol, plastid	73.16	74.6
Os02t0114700-01	Rice	cytosol	74.74	73.96
TraesCS6B01G053000.1	Wheat	plastid	74.39	72.23
TraesCS6A01G037800.1	Wheat	cytosol, nucleus, peroxisome, plastid	74.21	72.18
TraesCS6D01G043500.1	Wheat	cytosol, nucleus, peroxisome, plastid	74.56	72.16
GSMUA_Achr9P23650_001	Banana	cytosol	54.91	54.53
CDY39753	Canola	cytosol	46.49	48.98
CDY46387	Canola	cytosol	45.96	48.25
CDX67491	Canola	cytosol	46.49	47.49
Bra025513.1-P	Field mustard	cytosol	47.02	46.77
Bra028490.1-P	Field mustard	cytosol, plastid	45.96	45.49
VIT_02s0025g03690.t01	Wine grape	cytosol	50.18	45.18
PGSC0003DMT400076613	Potato	plastid	49.65	44.22
KRH59854	Soybean	nucleus, plastid	48.95	44.15
PGSC0003DMT400014917	Potato	plastid	48.77	43.3
AT5G41190.1	Thale cress	cytosol	45.61	43.19
KRH41155	Soybean	nucleus	47.89	43.06
Solyc08g007990.2.1	Tomato	plastid	48.42	42.99
CDY66426	Canola	cytosol, plastid	32.98	40.09
CDY25417	Canola	endoplasmic reticulum, extracellular	21.05	19.26

Protein Annotations

EntrezGene:100276745	MapMan:17.1.1.8.3	MapMan:17.1.3.2.1.6	Gene3D:3.30.40.120	Gene3D:3.40.50.1010	ProteinID:AQK67842.1
UniProt:B6THD0	EMBL:BT067208	EMBL:EU964395	GO:GO:0000469	GO:GO:0003674	GO:GO:0003824
GO:GO:0004518	GO:GO:0004521	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0042274	GO:GO:0046872	GO:GO:0090502	InterPro:IPR036283
InterPro:NOB1_Zf-like_sf	InterPro:NOB1_Zn-bd	InterPro:Nob1_euk	PFAM:PF08772	PFAM:PF17146	PIRSF:PIRSF037125
PANTHER:PTHR12814	InterPro:Ribonuclease_PIN	SUPFAM:SSF144206	UniParc:UPI000182D89B	EnsemblPlantsGene:Zm00001d014988	EnsemblPlants:Zm00001d014988_P001
EnsemblPlants:Zm00001d014988_T001	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:71247670..71250750

Molecular Weight (calculated)

62106.4 Da

IEP (calculated)

5.421

GRAVY (calculated)

-0.424

Length

570 amino acids

Sequence
(BLAST)

001: MEAWPPLAPA AATPACALAW GAAATAQRKA VEQESAAQAV SRIVASCANS SGVAVAVVDA NAVISGGSAL STSAGRLVTV PEVLEEVRDA TARRRLGLLP
101: VPVETVEPAP EFVKKVTKFA RETGDIQTLS DVDIKIIALA YMLEAEIHGT SHLREHPPPL HEVNVRKLSE AQMPGWGSNV PNLKEWEELD QMSEAGGDIN
201: SRILPLKDIE SQDILMCDTN SLCGAQEDTE LQPSKKDAPV AWEDDENNVG WMPAVSRSMH RRYLQRKARR DALKESGQSF ETSSVVPSID DDKVLSENSG
301: LEHGLTSTDG LSSVTEIISA RSDDFEHQAE NDTEIAGEHL HSDQRAYGDD ADACTKELEN LDIEGEDEGG GDAHFIVDES SEQSWTLRSL SESTVACVTS
401: DYAMQNVILL IGLRLIAPGG MQIRQMHRWV LRCHACYKVT QEVGKIFCPK CGNGGTLRKV SVTVGENGIT MASRRPRVTL RGTKFSLPMP QGGRDAITKN
501: PILREDQLPQ KVLHPKLKKS NKDDDFLGVV DIFSHGGDKK APLKPPVRKA LAMFSGKRNP NDNHFSRKKY

Best Arabidopsis Sequence Match ( AT5G41190.1 )
(BLAST)

001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH

Arabidopsis Description

RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.