CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59854	Soybean	nucleus, plastid	89.91	90.19
VIT_02s0025g03690.t01	Wine grape	cytosol	60.25	60.35
CDY39753	Canola	cytosol	50.47	59.15
CDY46387	Canola	cytosol	50.63	59.12
Bra025513.1-P	Field mustard	cytosol	52.84	58.46
PGSC0003DMT400076613	Potato	plastid	58.36	57.81
CDX67491	Canola	cytosol	49.68	56.45
AT5G41190.1	Thale cress	cytosol	53.47	56.31
Bra028490.1-P	Field mustard	cytosol, plastid	50.47	55.56
PGSC0003DMT400014917	Potato	plastid	55.99	55.3
Solyc08g007990.2.1	Tomato	plastid	55.99	55.3
GSMUA_Achr9P23650_001	Banana	cytosol	48.58	53.66
Os02t0114700-01	Rice	cytosol	44.95	49.48
HORVU6Hr1G007020.2	Barley	cytosol, plastid	42.9	48.66
EES04356	Sorghum	plastid	44.16	48.11
Zm00001d014988_P001	Maize	plastid	43.06	47.89
TraesCS6A01G037800.1	Wheat	cytosol, nucleus, peroxisome, plastid	43.69	47.27
TraesCS6B01G053000.1	Wheat	plastid	43.53	47.02
TraesCS6D01G043500.1	Wheat	cytosol, nucleus, peroxisome, plastid	43.53	46.86
CDY66426	Canola	cytosol, plastid	34.54	46.7
Zm00001d054047_P001	Maize	cytosol, plastid	42.59	46.39
CDY25417	Canola	endoplasmic reticulum, extracellular	26.34	26.81

Protein Annotations

EntrezGene:100785714	MapMan:17.1.1.8.3	MapMan:17.1.3.2.1.6	Gene3D:3.30.40.120	Gene3D:3.40.50.1010	EMBL:ACUP02004751
EnsemblPlantsGene:GLYMA_08G013300	GO:GO:0000469	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0004521
GO:GO:0005575	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0030490	GO:GO:0030688	GO:GO:0090502	UniProt:I1KP89	InterPro:IPR036283	EnsemblPlants:KRH41155
ProteinID:KRH41155	ProteinID:KRH41155.1	InterPro:NOB1_Zf-like_sf	InterPro:NOB1_Zn-bd	PFAM:PF08772	PFAM:PF17146
PANTHER:PTHR12814	InterPro:Ribonuclease_PIN	SUPFAM:SSF144206	UniParc:UPI0002337CC7	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:1047222..1050024

Molecular Weight (calculated)

69846.9 Da

IEP (calculated)

5.264

GRAVY (calculated)

-0.609

Length

634 amino acids

Sequence
(BLAST)

001: MEETPSSVPA TASCWSNVVK KQPPPPPQQH TERVLVETSD SPNAISVAVV DANAVIESGE KLHGLADKFI SIPEVMEEIR DPVSRHKLSF LPFTIQTMEP
101: SSESINKVVK FARATGDLQT LSDVDIKLIA LTYTLEGQIH GTKHIRDAPP PVQMVNVKRL PEKDLPGWGS NVPNLDEWEA LEHAEDASNS NSRILPLQDL
201: SLNIVSQDEH SVDGSVEPVS EADLGIQEGG QNGLTKPRRY LPKKKEIKIE GKTMVADGID ASQGGVDDNA GDWMPAVSRS THRRYLRRKA RREYHESLSS
301: NQDQQELEAN VVDGSVGEDA SALNPPVHQR DEEQHIENAV LEDGKVVKEN KDNESIYEIM QQMRLEEGSL EVLDEESKPS SFPKELQSDN AGLVETASDG
401: NATVVNKPCD SGTDTIDGQS NQLEIASQTS EVADFSCADD DDSDQSWVVR SLSESSVACI TGDFAMQNVL LQMGLRLLAP GGTQIHQLHR WILKCHACYT
501: VTGEIGRIFC PKCGNGGTLR KVAVTVNENG IVLAARRPRV TLRGTKFSLP LPQGGRDAVS KNLILREDQL PHRVLYPKTK KANKQDDDFF TPDSVFSHHT
601: DKKAPFQPPV RKAMAVFGGR RNPNDNHYSR SKHK

Best Arabidopsis Sequence Match ( AT5G41190.1 )
(BLAST)

001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH

Arabidopsis Description

RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.