CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67491	Canola	cytosol	72.92	61.29
CDY39753	Canola	cytosol	62.9	54.53
CDY46387	Canola	cytosol	62.9	54.33
AT5G41190.1	Thale cress	cytosol	61.62	48.01
VIT_02s0025g03690.t01	Wine grape	cytosol	47.76	35.39
PGSC0003DMT400076613	Potato	plastid	47.55	34.84
Solyc08g007990.2.1	Tomato	plastid	47.33	34.58
KRH41155	Soybean	nucleus	46.7	34.54
Os02t0114700-01	Rice	cytosol	42.0	34.2
KRH59854	Soybean	nucleus, plastid	46.06	34.18
PGSC0003DMT400014917	Potato	plastid	46.7	34.11
HORVU6Hr1G007020.2	Barley	cytosol, plastid	40.51	33.99
EES04356	Sorghum	plastid	40.94	32.99
Zm00001d014988_P001	Maize	plastid	40.09	32.98
Zm00001d054047_P001	Maize	cytosol, plastid	40.3	32.47
TraesCS6B01G053000.1	Wheat	plastid	40.51	32.37
TraesCS6D01G043500.1	Wheat	cytosol, nucleus, peroxisome, plastid	40.3	32.09
TraesCS6A01G037800.1	Wheat	cytosol, nucleus, peroxisome, plastid	40.09	32.08
GSMUA_Achr9P23650_001	Banana	cytosol	39.02	31.88
CDY25417	Canola	endoplasmic reticulum, extracellular	29.21	21.99

Protein Annotations

EnsemblPlants:CDY66426	EnsemblPlantsGene:GSBRNA2T00053603001	Gene3D:3.30.40.120	InterPro:IPR036283	InterPro:NOB1_Zf-like_sf	InterPro:NOB1_Zn-bd
PANTHER:PTHR12814	PFAM:PF08772	ProteinID:CDY66426	ProteinID:CDY66426.1	SEG:seg	SUPFAM:SSF144206
UniParc:UPI0004EE2C3A	UniProt:A0A078JKV7	MapMan:17.1.1.8.3	MapMan:17.1.3.2.1.6	:	:

Description

BnaC06g42290DBnaC06g42290D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JKV7]

Coordinates

chrLK035260:+:2..6333

Molecular Weight (calculated)

52546.2 Da

IEP (calculated)

7.951

GRAVY (calculated)

-0.669

Length

469 amino acids

Sequence
(BLAST)

001: KSFIENLLLR ASSNFCINVS QLPVKRMSST YNKSTNSECI TCFTLGPSLP LSIVDLTSRP ISCCLTRRSY LAGAPMWLTW RSGRHLRTRL RTNQTLLPKS
101: FRLPLKDLNM NILPSDSCSE VGSVVSHTED DEEGERRQKR YPPKKTEVKG ENDDEDGGEW RPAVSSSTHR KFLRRKAKWE HYNALAEQEI HKDQEAANFT
201: NDQMSNDAED KCGKDSGKND EELSSILKDM RLEEGTEETN LSNGEDDVEV EAEGIDVASE AGDTFEASSM ADDGGSEQSW SLRALSESSV ACITGDYAMQ
301: NVIIQMGLCL LAPGGMQIRQ LNRWVLKCHA CYTVTPEIGR IFCPKCGNGG TLRKVAVTIG ENGTIIAARK PRVTLRGTKF SIPMPKSGRD AITKNLVLRE
401: DQLPQKYLHP KTKKKASKPG DDYFISDDVF MHYHSDRKAP LQPPVRKAMA VFSQKRNPND NHYSRSMHC

Best Arabidopsis Sequence Match ( AT5G41190.1 )
(BLAST)

001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH

Arabidopsis Description

RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.