Factsheet for HORVU6Hr1G007020.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G053000.1	Wheat	plastid	93.92	89.44
TraesCS6D01G043500.1	Wheat	cytosol, nucleus, peroxisome, plastid	93.02	88.29
TraesCS6A01G037800.1	Wheat	cytosol, nucleus, peroxisome, plastid	91.95	87.71
Os02t0114700-01	Rice	cytosol	78.53	76.22
EES04356	Sorghum	plastid	76.57	73.54
Zm00001d014988_P001	Maize	plastid	74.6	73.16
Zm00001d054047_P001	Maize	cytosol, plastid	75.49	72.51
GSMUA_Achr9P23650_001	Banana	cytosol	56.17	54.7
CDY39753	Canola	cytosol	48.84	50.46
CDY46387	Canola	cytosol	48.3	49.72
Bra025513.1-P	Field mustard	cytosol	49.91	48.69
CDX67491	Canola	cytosol	48.48	48.57
Bra028490.1-P	Field mustard	cytosol, plastid	47.94	46.53
VIT_02s0025g03690.t01	Wine grape	cytosol	52.06	45.97
AT5G41190.1	Thale cress	cytosol	49.02	45.51
PGSC0003DMT400076613	Potato	plastid	51.88	45.31
PGSC0003DMT400014917	Potato	plastid	50.8	44.24
KRH59854	Soybean	nucleus, plastid	49.91	44.15
Solyc08g007990.2.1	Tomato	plastid	50.27	43.77
KRH41155	Soybean	nucleus	48.66	42.9
CDY66426	Canola	cytosol, plastid	33.99	40.51
CDY25417	Canola	endoplasmic reticulum, extracellular	23.08	20.71

Protein Annotations

MapMan:17.1.1.8.3	MapMan:17.1.3.2.1.6	Gene3D:3.30.40.120	Gene3D:3.40.50.1010	UniProt:A0A287T8K0	GO:GO:0000469
GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0004521	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006364	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009553	GO:GO:0009555	GO:GO:0009987	GO:GO:0016787
GO:GO:0042274	GO:GO:0046872	GO:GO:0090502	EnsemblPlantsGene:HORVU6Hr1G007020	EnsemblPlants:HORVU6Hr1G007020.2	InterPro:IPR036283
InterPro:NOB1_Zf-like_sf	InterPro:NOB1_Zn-bd	InterPro:Nob1_euk	PFAM:PF08772	PFAM:PF17146	PIRSF:PIRSF037125
PANTHER:PTHR12814	InterPro:Ribonuclease_PIN	SUPFAM:SSF144206	UniParc:UPI000B479C6C	SEG:seg	:

Description

No Description!

Coordinates

chrchr6H:-:14498821..14502658

Molecular Weight (calculated)

60797.4 Da

IEP (calculated)

5.256

GRAVY (calculated)

-0.497

Length

559 amino acids

Sequence
(BLAST)

001: MAWGAAATAR RETVAKESSA QAVSRIVSSC ASSSGLAVAV VDANAVISGG AALASTAGRL VTVPEVLDEV RDAAARRRLA LLPAPVETVE PAPEFVKRVV
101: KFARETGDLQ TLSDVDMKII ALAYMLEAEV HGTSHLREHP PPLHVVSVRT LQEAPLPGWG SNVTNLAEWE ALDKMSESGG DLNSRILPLK DLENQEIPTS
201: ETNSISETQG DAEFQPSKRD ACIPWEDDEN NEGWLPAVGR TTHRKYLRRK ARRDALKASE QSFDTSSVAP TVDEDNDLSE NGLDSVDGPS VVPEKTRSNT
301: DNLESQEEDE PKIAGDQQSN GENGVGNAYT IEGRDVTDAC TEQLDNLDIK SETEEGVSVS ASFVDDESSE QSWALRSLSE STVACVTSDY AMQNVILQIG
401: LRLLAPGGMQ IRQLHRWVLR CHACYKVTQE IGKIFCPKCG NGGTLRKVSV TVGENGITMA SRRPRVTLRG TKFSLPMPQG GRDAVIKNPI LREDQLPQKV
501: LHPKSKKSSK LGDDFLGAED IFTHSGEKKV ELKPPVRKAL AMFSGKRNPN DNHFSRKKN

Best Arabidopsis Sequence Match ( AT5G41190.1 )
(BLAST)

001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH

Arabidopsis Description

RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.