Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67491 | Canola | cytosol | 39.49 | 44.09 |
| CDY46387 | Canola | cytosol | 37.88 | 43.46 |
| CDY39753 | Canola | cytosol | 37.24 | 42.88 |
| VIT_02s0025g03690.t01 | Wine grape | cytosol | 30.02 | 29.54 |
| CDY66426 | Canola | cytosol, plastid | 21.99 | 29.21 |
| PGSC0003DMT400076613 | Potato | plastid | 29.05 | 28.28 |
| Solyc08g007990.2.1 | Tomato | plastid | 28.41 | 27.57 |
| PGSC0003DMT400014917 | Potato | plastid | 27.77 | 26.95 |
| KRH59854 | Soybean | nucleus, plastid | 26.97 | 26.58 |
| KRH41155 | Soybean | nucleus | 26.81 | 26.34 |
| GSMUA_Achr9P23650_001 | Banana | cytosol | 23.76 | 25.78 |
| TraesCS6D01G043500.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 21.99 | 23.26 |
| HORVU6Hr1G007020.2 | Barley | cytosol, plastid | 20.71 | 23.08 |
| TraesCS6B01G053000.1 | Wheat | plastid | 21.51 | 22.83 |
| Os02t0114700-01 | Rice | cytosol | 20.87 | 22.57 |
| TraesCS6A01G037800.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 21.03 | 22.35 |
| EES04356 | Sorghum | plastid | 20.22 | 21.65 |
| Zm00001d054047_P001 | Maize | cytosol, plastid | 19.74 | 21.13 |
| Zm00001d014988_P001 | Maize | plastid | 19.26 | 21.05 |
Protein Annotations
| EnsemblPlants:CDY25417 | EnsemblPlantsGene:GSBRNA2T00032607001 | Gene3D:3.40.1190.20 | Gene3D:3.40.50.1010 | InterPro:IPR029056 | InterPro:Ribokinase-like |
| InterPro:Ribonuclease_PIN | PANTHER:PTHR43320 | PANTHER:PTHR43320:SF1 | PFAM:PF17146 | ProteinID:CDY25417 | ProteinID:CDY25417.1 |
| SEG:seg | SUPFAM:SSF53613 | UniParc:UPI0004EF2986 | UniProt:A0A078GJQ8 | MapMan:17.1.1.8.3 | MapMan:17.1.3.2.1.6 |
Description
BnaC09g39320DBnaC09g39320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJQ8]
Coordinates
chrLK032175:-:10551..12422
Molecular Weight (calculated)
70560.9 Da
IEP (calculated)
4.703
GRAVY (calculated)
-0.495
Length
623 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVCMLFWHR TDVDLLLLLV EDVNREEESD DEDPLKRDDE LKEIVDEYFG KESELGEGEK FLSYYFLKPM CKEEDGKTKT QVIDEAEIEL FEKNEDLVFG
101: MDGNCKSTKG ISMAVVDAYA VMNEQSVTDL AENFVTVPEV LSEIRDAQHR LKFISFTIET MEPSPESLSR FIKFAKAIGD LHTLSDVDLK LIALTHTFEA
201: EVHGIKNLRD VPPPIQIVRV KRLPEKELPG LGFHVANLEE REALGNGTEE KSNTTAKILL LQDTNMNIIP SENCYEASSV ASHTVDEEEE GGRRQKRYPP
301: KKTEVKLEGN MVVEGLYTSQ GENDEEDGGK WRHAVSSSTH KYLFRRRTKW EHYNALAEQE IQKDQKADKA GYFTQDTNDQ MSNDSKGKCS EKNDEELSSI
401: LKDMRLEEDS LKALQEGTEE TNFSNGENDI EVEAEGIDVA NVANTVRGFS FRFGVATKII EACADNEQIQ LFVGNMGFSG VSISMLRKKK ISTGQCVCLI
501: DDYGNRTMRP CLSSGVKILA DELIKADFTG FKWLVLRYAV LNLEVIKVAI GFAKQEGLSV SLDLASLKMA PYIEKDWELN KYKVEKKLKF KMCSSLRERM
601: LKISLKKACG ASYSKDIRNV KEI
101: MDGNCKSTKG ISMAVVDAYA VMNEQSVTDL AENFVTVPEV LSEIRDAQHR LKFISFTIET MEPSPESLSR FIKFAKAIGD LHTLSDVDLK LIALTHTFEA
201: EVHGIKNLRD VPPPIQIVRV KRLPEKELPG LGFHVANLEE REALGNGTEE KSNTTAKILL LQDTNMNIIP SENCYEASSV ASHTVDEEEE GGRRQKRYPP
301: KKTEVKLEGN MVVEGLYTSQ GENDEEDGGK WRHAVSSSTH KYLFRRRTKW EHYNALAEQE IQKDQKADKA GYFTQDTNDQ MSNDSKGKCS EKNDEELSSI
401: LKDMRLEEDS LKALQEGTEE TNFSNGENDI EVEAEGIDVA NVANTVRGFS FRFGVATKII EACADNEQIQ LFVGNMGFSG VSISMLRKKK ISTGQCVCLI
501: DDYGNRTMRP CLSSGVKILA DELIKADFTG FKWLVLRYAV LNLEVIKVAI GFAKQEGLSV SLDLASLKMA PYIEKDWELN KYKVEKKLKF KMCSSLRERM
601: LKISLKKACG ASYSKDIRNV KEI
001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH
Arabidopsis Description
RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.