CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46387	Canola	cytosol	96.49	96.13
Bra025513.1-P	Field mustard	cytosol	97.41	91.97
CDX67491	Canola	cytosol	87.25	84.59
AT5G41190.1	Thale cress	cytosol	81.15	72.92
CDY66426	Canola	cytosol, plastid	54.53	62.9
VIT_02s0025g03690.t01	Wine grape	cytosol	62.29	53.24
KRH59854	Soybean	nucleus, plastid	59.33	50.79
PGSC0003DMT400076613	Potato	plastid	60.07	50.78
GSMUA_Achr9P23650_001	Banana	cytosol	53.79	50.7
KRH41155	Soybean	nucleus	59.15	50.47
Solyc08g007990.2.1	Tomato	plastid	59.15	49.84
PGSC0003DMT400014917	Potato	plastid	58.41	49.22
HORVU6Hr1G007020.2	Barley	cytosol, plastid	50.46	48.84
Os02t0114700-01	Rice	cytosol	50.28	47.22
TraesCS6D01G043500.1	Wheat	cytosol, nucleus, peroxisome, plastid	51.2	47.03
TraesCS6B01G053000.1	Wheat	plastid	50.83	46.85
TraesCS6A01G037800.1	Wheat	cytosol, nucleus, peroxisome, plastid	50.65	46.76
EES04356	Sorghum	plastid	50.28	46.74
Zm00001d014988_P001	Maize	plastid	48.98	46.49
Zm00001d054047_P001	Maize	cytosol, plastid	48.98	45.53
CDY25417	Canola	endoplasmic reticulum, extracellular	42.88	37.24

Protein Annotations

MapMan:17.1.1.8.3	MapMan:17.1.3.2.1.6	Gene3D:3.30.40.120	Gene3D:3.40.50.1010	GO:A0A078HSM8	UniProt:A0A078HSM8
EnsemblPlants:CDY39753	ProteinID:CDY39753	ProteinID:CDY39753.1	ncoils:Coil	GO:GO:0000469	GO:GO:0003674
GO:GO:0003824	GO:GO:0004518	GO:GO:0004521	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0042274	GO:GO:0046872	GO:GO:0090502
EnsemblPlantsGene:GSBRNA2T00068544001	InterPro:IPR036283	InterPro:NOB1_Zf-like_sf	InterPro:NOB1_Zn-bd	InterPro:Nob1_euk	PFAM:PF08772
PFAM:PF17146	PIRSF:PIRSF037125	PANTHER:PTHR12814	InterPro:Ribonuclease_PIN	SUPFAM:SSF144206	UniParc:UPI0004EEF94D
SEG:seg	:	:	:	:	:

Description

BnaA04g11000DBnaA04g11000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSM8]

Coordinates

chrLK032456:+:282465..284735

Molecular Weight (calculated)

59499.2 Da

IEP (calculated)

5.179

GRAVY (calculated)

-0.601

Length

541 amino acids

Sequence
(BLAST)

001: MDPKPASMWS SIVKKDPPAK PPTTDVAPSA ILGMVGNCKS TKGISVAVVD ANAVIDGSQS LTNFADKFVT VPEVLSEIRD PNSRRRLEFI PFVIETMEPS
101: PESLSKVIKF AKATGDLQTL SDVDLKLIAL TYTLEAEVHG TKNLRDVPPP IQTVRVKRLP EKELPGWGSN VANLEEWEAL ENETEEKSNT TSKILPLKDL
201: SMNILPPSDS CSEVGDVASQ TEGIDASQGG NDDDEDGGGE WRPAVSSSTH RKFLRRKAKW EHYNALAEQE FQKDQEADKA GEKKCAKDSG KDDEELSSIL
301: NDMRVEEDSL KALQEEPEET NGEDDTEVDI ASEGGDTFEA SSMADDGSSE QSWSLRALSE SSVACITGDY AMQNVIIQMG LRLLAPGGMQ IRQLNRWVLK
401: CHACYTVTPE IGRIFCPKCG NGGTLRKVAV TIGENGTIVA ARKPRVTLRG TKFSIPMPKS GRDAITKNLV LREDQLPQKY LHPKTKKKAS KAGDEYFISD
501: DVFMNHHSDK KAPLQPPVRK AMAVFSQKRN PNDNHYSRSM H

Best Arabidopsis Sequence Match ( AT5G41190.1 )
(BLAST)

001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH

Arabidopsis Description

RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.