Factsheet for Bra025513.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39753	Canola	cytosol	91.97	97.41
CDY46387	Canola	cytosol	91.45	96.5
Bra028490.1-P	Field mustard	cytosol, plastid	85.51	85.07
AT5G41190.1	Thale cress	cytosol	80.8	76.91
VIT_02s0025g03690.t01	Wine grape	cytosol	62.3	56.4
PGSC0003DMT400076613	Potato	plastid	59.69	53.44
KRH59854	Soybean	nucleus, plastid	58.64	53.16
KRH41155	Soybean	nucleus	58.46	52.84
Solyc08g007990.2.1	Tomato	plastid	58.64	52.34
PGSC0003DMT400014917	Potato	plastid	57.77	51.56
GSMUA_Achr9P23650_001	Banana	cytosol	50.79	50.7
HORVU6Hr1G007020.2	Barley	cytosol, plastid	48.69	49.91
Os02t0114700-01	Rice	cytosol	48.34	48.09
TraesCS6D01G043500.1	Wheat	cytosol, nucleus, peroxisome, plastid	49.39	48.05
TraesCS6B01G053000.1	Wheat	plastid	49.04	47.87
TraesCS6A01G037800.1	Wheat	cytosol, nucleus, peroxisome, plastid	48.87	47.78
EES04356	Sorghum	plastid	47.99	47.25
Zm00001d014988_P001	Maize	plastid	46.77	47.02
Zm00001d054047_P001	Maize	cytosol, plastid	46.77	46.05

Protein Annotations

MapMan:17.1.1.8.3	MapMan:17.1.3.2.1.6	Gene3D:3.30.40.120	Gene3D:3.40.50.1010	EnsemblPlantsGene:Bra025513	EnsemblPlants:Bra025513.1
EnsemblPlants:Bra025513.1-P	ncoils:Coil	GO:GO:0000469	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518
GO:GO:0004521	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006364	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009553
GO:GO:0009555	GO:GO:0009987	GO:GO:0016787	GO:GO:0042274	GO:GO:0046872	GO:GO:0090502
InterPro:IPR036283	UniProt:M4E9Q7	InterPro:NOB1_Zf-like_sf	InterPro:NOB1_Zn-bd	InterPro:Nob1_euk	PFAM:PF08772
PFAM:PF17146	PIRSF:PIRSF037125	PANTHER:PTHR12814	InterPro:Ribonuclease_PIN	SUPFAM:SSF144206	UniParc:UPI0002545293
SEG:seg	:	:	:	:	:

Description

AT5G41190 (E=2e-127) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 855 Blast hits to 653 proteins in 196 species: Archae - 53; Bacteria - 16; Metazoa - 335; Fungi - 168; Plants - 29; Viruses - 10; Other Eukaryotes - 244 (source: NCBI BLink).

Coordinates

chrA04:-:8227277..8229342

Molecular Weight (calculated)

63268.7 Da

IEP (calculated)

5.228

GRAVY (calculated)

-0.676

Length

573 amino acids

Sequence
(BLAST)

001: MDPKPASMWS SIVKKDPPAK PPTTDVAPSA ILGMVGNCKS TKGISVAVVD ANAVIDGSQS LTNFADKFVT VPEVLSEIRD PNSRRRLEFI PFVIETMEPS
101: PESLSKVIKF AKATGDLQTL SDVDLKLIAL TYTLEAEVHG TKNLRDVPPP IQTVRVKRLP EKELPGWGSN VANLEEWEAL ENETEEKSNT TSKILPLKDL
201: NMNILPPSDS CSEVGDVASQ TEGQEEDEEE GGRRQKRYPP KKTEVKIEGK MVVEGIDASQ GGNDDDEDGG GEWRPAVSSS THRKFLRRKA KWEHYNALAE
301: KEFQKDQEAD KAGEKKCAKD SGKDDEELSS ILNDMRVEED SLKALQEEPE ETNGEDDTEV DIASEGGDTF EASSMADDGS SEQSWSLRAL SESSVACISG
401: DYAMQNVIIQ MGLRLLAPGG MQIRQLNRWV LKCHACYTVT PEIGRIFCPK CGNGGTLRKV AVTIGENGTI IAARKPRVTL RGTKFSIPMP KSGRDAITKN
501: LVLREDQLPQ KYLHPKTKKK ASKAGDEYFI SDDVFMNHHS DKKAPLQPPV RKAMAVFSQK RNPNDNHYSR SMH

Best Arabidopsis Sequence Match ( AT5G41190.1 )
(BLAST)

001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH

Arabidopsis Description

RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.