Factsheet for Bra028490.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 4
plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67491	Canola	cytosol	90.8	93.73
Bra025513.1-P	Field mustard	cytosol	85.07	85.51
VIT_02s0025g03690.t01	Wine grape	cytosol	59.03	53.71
PGSC0003DMT400076613	Potato	plastid	57.81	52.03
KRH59854	Soybean	nucleus, plastid	55.9	50.95
Solyc08g007990.2.1	Tomato	plastid	56.77	50.93
KRH41155	Soybean	nucleus	55.56	50.47
PGSC0003DMT400014917	Potato	plastid	55.73	50.0
GSMUA_Achr9P23650_001	Banana	cytosol	49.65	49.83
HORVU6Hr1G007020.2	Barley	cytosol, plastid	46.53	47.94
Os02t0114700-01	Rice	cytosol	47.05	47.05
Zm00001d014988_P001	Maize	plastid	45.49	45.96
TraesCS6B01G053000.1	Wheat	plastid	46.7	45.83
EES04356	Sorghum	plastid	46.18	45.7
TraesCS6D01G043500.1	Wheat	cytosol, nucleus, peroxisome, plastid	46.53	45.5
TraesCS6A01G037800.1	Wheat	cytosol, nucleus, peroxisome, plastid	46.18	45.39
Zm00001d054047_P001	Maize	cytosol, plastid	45.31	44.85

Protein Annotations

MapMan:17.1.1.8.3	MapMan:17.1.3.2.1.6	Gene3D:3.30.40.120	Gene3D:3.40.50.1010	EnsemblPlantsGene:Bra028490	EnsemblPlants:Bra028490.1
EnsemblPlants:Bra028490.1-P	GO:GO:0000469	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0004521
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0042274	GO:GO:0046872	GO:GO:0090502	InterPro:IPR036283	UniProt:M4EI75	InterPro:NOB1_Zf-like_sf
InterPro:NOB1_Zn-bd	InterPro:Nob1_euk	PFAM:PF08772	PFAM:PF17146	PIRSF:PIRSF037125	PANTHER:PTHR12814
InterPro:Ribonuclease_PIN	SUPFAM:SSF144206	UniParc:UPI0002543388	SEG:seg	:	:

Description

AT5G41190 (E=2e-118) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 855 Blast hits to 653 proteins in 196 species: Archae - 53; Bacteria - 16; Metazoa - 335; Fungi - 168; Plants - 29; Viruses - 10; Other Eukaryotes - 244 (source: NCBI BLink).

Coordinates

chrA02:-:643705..645828

Molecular Weight (calculated)

63626.0 Da

IEP (calculated)

5.082

GRAVY (calculated)

-0.599

Length

576 amino acids

Sequence
(BLAST)

001: MESSPASMWS SIVKKDPPSK PPTTDVAPAA ILGMVGNCKS TKGISVAVVD ANAVIDGRQS LTDFADKFVT VPEVLSEIRD SDSRRRLEFI PFAIETMEPS
101: PESLSKVIKF AKATGDLHTL SDVDLKLIAL TYTLEAEVHG TKNLRDVPPP IQTVRVKRLP EKELPGWGSN VANLEEWEAL ENETEENSNT ASKILPLKDL
201: NMNILPSDSC YEVGSVVSHT EDDEEGVRRQ KKTEVKVEGK MVVEGIDASQ GENDDEDGGD WRPAVSSSTH RKFLRRKAKW EHYNALAEQE IHKDEEADKA
301: ANLIQDTNDQ MSNGAVEKCA KDRGKNDEEL SFILKDMRLE EGTEETNLSN GEDDDEVEGE EIDVASEAGD TFGASSMADD GGSEQSWSLR ALSESSVACI
401: TGDYAMQNVI IQMGLRLLAP GGMQIRQLNR WVLKCHACYT VTPEIGRIFC PTCGNGGTLR KVAVTIGENG TIIAARKPRV TLRGTKFSIP MPKSGRDAIT
501: KNLVLREDQL PQKYLHPKTK KKASKPGDEY FISNDVFMNH HSDRKAPLQP PVRKAMAVFS QKRNPNDNHY SRSMHC

Best Arabidopsis Sequence Match ( AT5G41190.1 )
(BLAST)

001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH

Arabidopsis Description

RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.