CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d054047_P001	Maize	cytosol, plastid	90.38	90.38
HORVU6Hr1G007020.2	Barley	cytosol, plastid	73.54	76.57
TraesCS6B01G053000.1	Wheat	plastid	76.63	75.98
Os02t0114700-01	Rice	cytosol	75.09	75.87
TraesCS6D01G043500.1	Wheat	cytosol, nucleus, peroxisome, plastid	76.29	75.38
TraesCS6A01G037800.1	Wheat	cytosol, nucleus, peroxisome, plastid	75.26	74.74
GSMUA_Achr9P23650_001	Banana	cytosol	54.81	55.57
CDY39753	Canola	cytosol	46.74	50.28
CDY46387	Canola	cytosol	46.05	49.36
CDX67491	Canola	cytosol	46.39	48.39
Bra025513.1-P	Field mustard	cytosol	47.25	47.99
VIT_02s0025g03690.t01	Wine grape	cytosol	50.34	46.29
Bra028490.1-P	Field mustard	cytosol, plastid	45.7	46.18
KRH59854	Soybean	nucleus, plastid	48.97	45.09
PGSC0003DMT400076613	Potato	plastid	49.14	44.69
AT5G41190.1	Thale cress	cytosol	45.7	44.19
KRH41155	Soybean	nucleus	48.11	44.16
PGSC0003DMT400014917	Potato	plastid	48.28	43.77
Solyc08g007990.2.1	Tomato	plastid	47.94	43.46
CDY66426	Canola	cytosol, plastid	32.99	40.94
CDY25417	Canola	endoplasmic reticulum, extracellular	21.65	20.22

Protein Annotations

MapMan:17.1.1.8.3	MapMan:17.1.3.2.1.6	Gene3D:3.30.40.120	Gene3D:3.40.50.1010	UniProt:C5XSA0	EnsemblPlants:EES04356
ProteinID:EES04356	ProteinID:EES04356.2	GO:GO:0000469	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518
GO:GO:0004521	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006364	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009553
GO:GO:0009555	GO:GO:0009987	GO:GO:0016787	GO:GO:0030490	GO:GO:0030688	GO:GO:0042274
GO:GO:0046872	GO:GO:0090502	InterPro:IPR036283	InterPro:NOB1_Zf-like_sf	InterPro:NOB1_Zn-bd	InterPro:Nob1_euk
PFAM:PF08772	PFAM:PF17146	PIRSF:PIRSF037125	PANTHER:PTHR12814	InterPro:Ribonuclease_PIN	EnsemblPlantsGene:SORBI_3004G011000
SUPFAM:SSF144206	unigene:Sbi.6304	UniParc:UPI0003C6F559	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:919626..922934

Molecular Weight (calculated)

62993.9 Da

IEP (calculated)

5.183

GRAVY (calculated)

-0.491

Length

582 amino acids

Sequence
(BLAST)

001: MEAWPPLAPA AAAAATPTAA ASGEAAAAPA VAGAWGAVAT AQRKAVVKES AAQAVSRIVA SCANSSGVAV AVVDANAVIS GGSALSTSAE RLVTVPEVLE
101: EVRDAAARRR LGLLPVPVET VEPAPEFVKK VTRFARETGD IQTLSDVDIK IIALAYMLEA EIHGTSHLRE HPPPLREVNV RKLSEAPLPG WGSNVPNLKE
201: WEELDQMSEA GGEINSRILP LKDIENQDIP MSETNSVCEA QEDTEHQPSE KDAPVAWEED ENNVGWMPAV SRSTHRRYLR RKARRDALKE SGESFETSSV
301: APSVDDDKDL SENSGLEHGL TSTDSIPEKI SASSDGLEHQ VEDDTEIAGG HLHSDQQAYG DDTDVCTKEL DNLDIKCEDE GGDDAHSIDD ESSEQSWTLR
401: SLSESTVACV TSDYAMQNVI LQIGLRLIAP GGMQIRQMHR WVLRCHACYK VTQEVGKIFC PKCGNGGTLR KVSVTVGENG ITMASRRPRV TLRGTKFSLP
501: MPQGGRDAIT KNPILREDQL PQKVLHPKSK KSSKEDDFLG VDDIFSHSGD KKAPLKPPVR KALAMFSGKR NPNDNHFSRK KH

Best Arabidopsis Sequence Match ( AT5G41190.1 )
(BLAST)

001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH

Arabidopsis Description

RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.