Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g007990.2.1 | Tomato | plastid | 97.2 | 97.2 |
| PGSC0003DMT400076613 | Potato | plastid | 88.47 | 88.75 |
| VIT_02s0025g03690.t01 | Wine grape | cytosol | 59.19 | 60.03 |
| CDY46387 | Canola | cytosol | 49.53 | 58.56 |
| CDY39753 | Canola | cytosol | 49.22 | 58.41 |
| Bra025513.1-P | Field mustard | cytosol | 51.56 | 57.77 |
| CDX67491 | Canola | cytosol | 49.22 | 56.63 |
| KRH59854 | Soybean | nucleus, plastid | 55.45 | 56.33 |
| KRH41155 | Soybean | nucleus | 55.3 | 55.99 |
| Bra028490.1-P | Field mustard | cytosol, plastid | 50.0 | 55.73 |
| AT5G41190.1 | Thale cress | cytosol | 52.18 | 55.65 |
| GSMUA_Achr9P23650_001 | Banana | cytosol | 47.2 | 52.79 |
| Os02t0114700-01 | Rice | cytosol | 45.64 | 50.87 |
| HORVU6Hr1G007020.2 | Barley | cytosol, plastid | 44.24 | 50.8 |
| TraesCS6B01G053000.1 | Wheat | plastid | 45.33 | 49.57 |
| TraesCS6A01G037800.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 45.17 | 49.49 |
| Zm00001d014988_P001 | Maize | plastid | 43.3 | 48.77 |
| TraesCS6D01G043500.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 44.7 | 48.73 |
| EES04356 | Sorghum | plastid | 43.77 | 48.28 |
| Zm00001d054047_P001 | Maize | cytosol, plastid | 43.15 | 47.59 |
| CDY66426 | Canola | cytosol, plastid | 34.11 | 46.7 |
| CDY25417 | Canola | endoplasmic reticulum, extracellular | 26.95 | 27.77 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400014917 | EnsemblPlantsGene:PGSC0003DMG400005819 | Gene3D:3.30.40.120 | Gene3D:3.40.50.1010 | InterPro:IPR036283 | InterPro:NOB1_Zf-like_sf |
| InterPro:NOB1_Zn-bd | InterPro:Ribonuclease_PIN | ncoils:Coil | PANTHER:PTHR12814 | PFAM:PF08772 | PFAM:PF17146 |
| PGSC:PGSC0003DMG400005819 | SEG:seg | SUPFAM:SSF144206 | UniParc:UPI000294BF4B | UniProt:M1A533 | MapMan:17.1.1.8.3 |
| MapMan:17.1.3.2.1.6 | : | : | : | : | : |
Description
RNA-binding protein nob1 [Source:PGSC_GENE;Acc:PGSC0003DMG400005819]
Coordinates
chr8:-:4801889..4806186
Molecular Weight (calculated)
70244.4 Da
IEP (calculated)
5.120
GRAVY (calculated)
-0.610
Length
642 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTQPPPPPP CWSNIVKQQP PPRPPPQLST TPATVTAAVA AATAAKVGNG VLVGSCKSTK GIAVAVVDAN AIIQGGDKLN HSADRFVTVP EVLAEIRDRN
101: SRHSLNLLPF TIDTTEPSPD SLKKVISFAR GTGDLHTLSD VDLKLIALTY TLHAQFHGTQ HLRDCPPAIH MINVKRLPEK DLPGWGANIS NPKEWEAIEH
201: ALDEGADTTS RILPLKDLSL NVIPLDQQSG RDGSVVNGVD SHSENQMDAD DGFSKPQKYL PQKKEVKING KKLVADGIDA SQGQYDDHGD DWLPAVSRST
301: HRRFLRRKAR REMSETSSKM DDLQDATENT VDENLENCQC DDISMNQIPE ENPEANAEDG NVSEVRDGEE KLSTILSQMR LEEDSAKALQ DDADVNISNE
401: GPESNDANQD GKEFEEDEGE DFVCADGGAE DAEMSSQMDE SVETSFVDDN SSEQSWMLKS LSESSVACVT ADYAMQNVIL QIGLRLVAPG GMQIRELHRW
501: VLKCHACYKV TTDVTKIFCP NCGNGGTLRK VAVTVGENGI VIAARRPCIS LRGTKFSLPL PQGGRGAVTK NPVLREDQLP QKYLYPKTKK KNKGDDNIFT
601: PDTIFLNHTS KKAPLQPPVR KALAVFSGKR NPNDNHYSRA KH
101: SRHSLNLLPF TIDTTEPSPD SLKKVISFAR GTGDLHTLSD VDLKLIALTY TLHAQFHGTQ HLRDCPPAIH MINVKRLPEK DLPGWGANIS NPKEWEAIEH
201: ALDEGADTTS RILPLKDLSL NVIPLDQQSG RDGSVVNGVD SHSENQMDAD DGFSKPQKYL PQKKEVKING KKLVADGIDA SQGQYDDHGD DWLPAVSRST
301: HRRFLRRKAR REMSETSSKM DDLQDATENT VDENLENCQC DDISMNQIPE ENPEANAEDG NVSEVRDGEE KLSTILSQMR LEEDSAKALQ DDADVNISNE
401: GPESNDANQD GKEFEEDEGE DFVCADGGAE DAEMSSQMDE SVETSFVDDN SSEQSWMLKS LSESSVACVT ADYAMQNVIL QIGLRLVAPG GMQIRELHRW
501: VLKCHACYKV TTDVTKIFCP NCGNGGTLRK VAVTVGENGI VIAARRPCIS LRGTKFSLPL PQGGRGAVTK NPVLREDQLP QKYLYPKTKK KNKGDDNIFT
601: PDTIFLNHTS KKAPLQPPVR KALAVFSGKR NPNDNHYSRA KH
001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH
Arabidopsis Description
RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.