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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 3
  • plastid 4
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400014917 Potato plastid 88.75 88.47
VIT_02s0025g03690.t01 Wine grape cytosol 60.62 61.3
CDY46387 Canola cytosol 51.09 60.22
CDY39753 Canola cytosol 50.78 60.07
Bra025513.1-P Field mustard cytosol 53.44 59.69
CDX67491 Canola cytosol 50.94 58.42
KRH59854 Soybean nucleus, plastid 57.66 58.39
KRH41155 Soybean nucleus 57.81 58.36
AT5G41190.1 Thale cress cytosol 54.69 58.14
Bra028490.1-P Field mustard cytosol, plastid 52.03 57.81
GSMUA_Achr9P23650_001 Banana cytosol 49.38 55.05
HORVU6Hr1G007020.2 Barley cytosol, plastid 45.31 51.88
Os02t0114700-01 Rice cytosol 45.62 50.69
TraesCS6B01G053000.1 Wheat plastid 46.41 50.6
TraesCS6A01G037800.1 Wheat cytosol, nucleus, peroxisome, plastid 46.25 50.51
TraesCS6D01G043500.1 Wheat cytosol, nucleus, peroxisome, plastid 46.41 50.42
Zm00001d014988_P001 Maize plastid 44.22 49.65
EES04356 Sorghum plastid 44.69 49.14
Zm00001d054047_P001 Maize cytosol, plastid 44.22 48.63
CDY66426 Canola cytosol, plastid 34.84 47.55
CDY25417 Canola endoplasmic reticulum, extracellular 28.28 29.05
Protein Annotations
EnsemblPlants:PGSC0003DMT400076613EnsemblPlantsGene:PGSC0003DMG400029793Gene3D:3.30.40.120Gene3D:3.40.50.1010InterPro:IPR036283InterPro:NOB1_Zf-like_sf
InterPro:NOB1_Zn-bdInterPro:Ribonuclease_PINncoils:CoilPANTHER:PTHR12814PFAM:PF08772PFAM:PF17146
PGSC:PGSC0003DMG400029793SEG:segSUPFAM:SSF144206UniParc:UPI000294FC3AUniProt:M1CX29MapMan:17.1.1.8.3
MapMan:17.1.3.2.1.6:::::
Description
RNA-binding protein nob1 [Source:PGSC_GENE;Acc:PGSC0003DMG400029793]
Coordinates
chr12:-:9943136..9946641
Molecular Weight (calculated)
70258.7 Da
IEP (calculated)
6.215
GRAVY (calculated)
-0.635
Length
640 amino acids
Sequence
(BLAST)
001: MDTQPPPPPP CWSSIVKQRP PPPPQPQLST TPSTVTAAAA AETAKAGNGV LVGSCKSTKG IAVAVVDTNA IIQGGDKLNH SADRFVSIPE VLSEIRDPNS
101: RRSLNFLPFT VDTMEPSPDS LKKVISFARA TGDLHTLSDV DLKLIALTHT LEAQFHGTQH LRDCPPPIHL VNVKRLPEKD LPGWGANVPN LKEWEAIEHA
201: LDNGANTNSR ILPLKDLSLN VIPLDQQSGR DGSVVNGGDS HSENQMAADD GFSKPQKYSP QKKEVKIEGK KMVADGIDAS QGQYDDHGDD WLPAVSRSTH
301: RRFLRRKARR EMSETSSKMD DLQDVTENTV DENLNNCQCD NISMHHNLEE NPKANAEAGK VSEVRDGEEH LSTILSQMRL EENSAKALQE DADVIISVEG
401: TESNDAKQDS KEFEEDEGKN FDCADGGGED AEMASQMDES IETSFVDDNS SEQSWMLKSL SESSVACVTA DYAMQNVILQ MGLRLVAPGG MQIRELHRWV
501: LKCHACYKVT TDVTRIFCPK CGNGGTLRKV AVTVGENGIV IAARRPRISL RGTKFSLPLP QGGRDAVTKN PILREDQLPQ KYLYPKTKKK NKGDDIFTPD
601: TIFLNHTSKK APLQPPVRKA LAVFSGKRNP NDNHYSHAKH
Best Arabidopsis Sequence Match ( AT5G41190.1 )
(BLAST)
001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH
Arabidopsis Description
RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.