Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400014917 | Potato | plastid | 88.75 | 88.47 |
VIT_02s0025g03690.t01 | Wine grape | cytosol | 60.62 | 61.3 |
CDY46387 | Canola | cytosol | 51.09 | 60.22 |
CDY39753 | Canola | cytosol | 50.78 | 60.07 |
Bra025513.1-P | Field mustard | cytosol | 53.44 | 59.69 |
CDX67491 | Canola | cytosol | 50.94 | 58.42 |
KRH59854 | Soybean | nucleus, plastid | 57.66 | 58.39 |
KRH41155 | Soybean | nucleus | 57.81 | 58.36 |
AT5G41190.1 | Thale cress | cytosol | 54.69 | 58.14 |
Bra028490.1-P | Field mustard | cytosol, plastid | 52.03 | 57.81 |
GSMUA_Achr9P23650_001 | Banana | cytosol | 49.38 | 55.05 |
HORVU6Hr1G007020.2 | Barley | cytosol, plastid | 45.31 | 51.88 |
Os02t0114700-01 | Rice | cytosol | 45.62 | 50.69 |
TraesCS6B01G053000.1 | Wheat | plastid | 46.41 | 50.6 |
TraesCS6A01G037800.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 46.25 | 50.51 |
TraesCS6D01G043500.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 46.41 | 50.42 |
Zm00001d014988_P001 | Maize | plastid | 44.22 | 49.65 |
EES04356 | Sorghum | plastid | 44.69 | 49.14 |
Zm00001d054047_P001 | Maize | cytosol, plastid | 44.22 | 48.63 |
CDY66426 | Canola | cytosol, plastid | 34.84 | 47.55 |
CDY25417 | Canola | endoplasmic reticulum, extracellular | 28.28 | 29.05 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400076613 | EnsemblPlantsGene:PGSC0003DMG400029793 | Gene3D:3.30.40.120 | Gene3D:3.40.50.1010 | InterPro:IPR036283 | InterPro:NOB1_Zf-like_sf |
InterPro:NOB1_Zn-bd | InterPro:Ribonuclease_PIN | ncoils:Coil | PANTHER:PTHR12814 | PFAM:PF08772 | PFAM:PF17146 |
PGSC:PGSC0003DMG400029793 | SEG:seg | SUPFAM:SSF144206 | UniParc:UPI000294FC3A | UniProt:M1CX29 | MapMan:17.1.1.8.3 |
MapMan:17.1.3.2.1.6 | : | : | : | : | : |
Description
RNA-binding protein nob1 [Source:PGSC_GENE;Acc:PGSC0003DMG400029793]
Coordinates
chr12:-:9943136..9946641
Molecular Weight (calculated)
70258.7 Da
IEP (calculated)
6.215
GRAVY (calculated)
-0.635
Length
640 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTQPPPPPP CWSSIVKQRP PPPPQPQLST TPSTVTAAAA AETAKAGNGV LVGSCKSTKG IAVAVVDTNA IIQGGDKLNH SADRFVSIPE VLSEIRDPNS
101: RRSLNFLPFT VDTMEPSPDS LKKVISFARA TGDLHTLSDV DLKLIALTHT LEAQFHGTQH LRDCPPPIHL VNVKRLPEKD LPGWGANVPN LKEWEAIEHA
201: LDNGANTNSR ILPLKDLSLN VIPLDQQSGR DGSVVNGGDS HSENQMAADD GFSKPQKYSP QKKEVKIEGK KMVADGIDAS QGQYDDHGDD WLPAVSRSTH
301: RRFLRRKARR EMSETSSKMD DLQDVTENTV DENLNNCQCD NISMHHNLEE NPKANAEAGK VSEVRDGEEH LSTILSQMRL EENSAKALQE DADVIISVEG
401: TESNDAKQDS KEFEEDEGKN FDCADGGGED AEMASQMDES IETSFVDDNS SEQSWMLKSL SESSVACVTA DYAMQNVILQ MGLRLVAPGG MQIRELHRWV
501: LKCHACYKVT TDVTRIFCPK CGNGGTLRKV AVTVGENGIV IAARRPRISL RGTKFSLPLP QGGRDAVTKN PILREDQLPQ KYLYPKTKKK NKGDDIFTPD
601: TIFLNHTSKK APLQPPVRKA LAVFSGKRNP NDNHYSHAKH
101: RRSLNFLPFT VDTMEPSPDS LKKVISFARA TGDLHTLSDV DLKLIALTHT LEAQFHGTQH LRDCPPPIHL VNVKRLPEKD LPGWGANVPN LKEWEAIEHA
201: LDNGANTNSR ILPLKDLSLN VIPLDQQSGR DGSVVNGGDS HSENQMAADD GFSKPQKYSP QKKEVKIEGK KMVADGIDAS QGQYDDHGDD WLPAVSRSTH
301: RRFLRRKARR EMSETSSKMD DLQDVTENTV DENLNNCQCD NISMHHNLEE NPKANAEAGK VSEVRDGEEH LSTILSQMRL EENSAKALQE DADVIISVEG
401: TESNDAKQDS KEFEEDEGKN FDCADGGGED AEMASQMDES IETSFVDDNS SEQSWMLKSL SESSVACVTA DYAMQNVILQ MGLRLVAPGG MQIRELHRWV
501: LKCHACYKVT TDVTRIFCPK CGNGGTLRKV AVTVGENGIV IAARRPRISL RGTKFSLPLP QGGRDAVTKN PILREDQLPQ KYLYPKTKKK NKGDDIFTPD
601: TIFLNHTSKK APLQPPVRKA LAVFSGKRNP NDNHYSHAKH
001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH
Arabidopsis Description
RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.