Factsheet for Zm00001d054047_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04356	Sorghum	plastid	90.38	90.38
Zm00001d014988_P001	Maize	plastid	84.88	86.67
HORVU6Hr1G007020.2	Barley	cytosol, plastid	72.51	75.49
Os02t0114700-01	Rice	cytosol	74.57	75.35
TraesCS6B01G053000.1	Wheat	plastid	75.77	75.13
TraesCS6D01G043500.1	Wheat	cytosol, nucleus, peroxisome, plastid	75.09	74.19
TraesCS6A01G037800.1	Wheat	cytosol, nucleus, peroxisome, plastid	74.23	73.72
GSMUA_Achr9P23650_001	Banana	cytosol	53.09	53.83
CDY39753	Canola	cytosol	45.53	48.98
CDY46387	Canola	cytosol	44.85	48.07
CDX67491	Canola	cytosol	45.53	47.49
Bra025513.1-P	Field mustard	cytosol	46.05	46.77
Bra028490.1-P	Field mustard	cytosol, plastid	44.85	45.31
VIT_02s0025g03690.t01	Wine grape	cytosol	48.63	44.71
PGSC0003DMT400076613	Potato	plastid	48.63	44.22
KRH59854	Soybean	nucleus, plastid	47.08	43.35
PGSC0003DMT400014917	Potato	plastid	47.59	43.15
Solyc08g007990.2.1	Tomato	plastid	47.25	42.83
KRH41155	Soybean	nucleus	46.39	42.59
AT5G41190.1	Thale cress	cytosol	43.81	42.36
CDY66426	Canola	cytosol, plastid	32.47	40.3
CDY25417	Canola	endoplasmic reticulum, extracellular	21.13	19.74

Protein Annotations

MapMan:17.1.1.8.3	MapMan:17.1.3.2.1.6	Gene3D:3.30.40.120	Gene3D:3.40.50.1010	UniProt:A0A1D6QUR7	ProteinID:AQK61116.1
GO:GO:0000469	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0004521	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0042274
GO:GO:0046872	GO:GO:0090502	InterPro:IPR036283	InterPro:NOB1_Zf-like_sf	InterPro:NOB1_Zn-bd	InterPro:Nob1_euk
PFAM:PF08772	PFAM:PF17146	PIRSF:PIRSF037125	PANTHER:PTHR12814	InterPro:Ribonuclease_PIN	SUPFAM:SSF144206
UniParc:UPI0008445943	EnsemblPlantsGene:Zm00001d054047	EnsemblPlants:Zm00001d054047_P001	EnsemblPlants:Zm00001d054047_T001	SEG:seg	:

Description

No Description!

Coordinates

chr4:-:245533965..245537220

Molecular Weight (calculated)

62582.6 Da

IEP (calculated)

5.167

GRAVY (calculated)

-0.427

Length

582 amino acids

Sequence
(BLAST)

001: MEAWPPLAPA AAAAATPVAA SDDAAVTPAG SGAWGPAATA QRKAVEQESA AQAVSRIVAS CANSSGVAVA VVDANAVISG APALSTSAGR LVTVPEVLEE
101: VRDAAARRRL GLLPIPVETV DPAPEFVKKV TKFARETGDI QTLSDVDIKI IALAYMLEAE IHGSSHLREH PPPLLEVNVR KLSEAPLPGW GSNVPNLKEW
201: EELDQMSEAG GDINSRILPL KDIENQDLPM SETNSVCEAQ EDTEDQPSEK DAPVAWEEDE NNVGWMPAVS RSTHRRYLRR KARRDALKES GQSFETSSVA
301: ASIDSDKVLS ENGGLEHGLT STGGLSSVPE KISASSDGFE LQADPEIAGE QLHSDQLSYG DDTDACTKEL DKLDIKGEDE GGDDAHSVDY ESSEQSWALR
401: SLSESTIACV TSDYAMQNVI LQIGLRLIAP GGMQIRQMHR WVLRCHACYK VTQEVGKIFC PKCGNGGTLR KVSVTVGENG ITMASRRPRV TLRGTKFSLP
501: MPQGGRDAIT KNPILREDQL PQKVLHPKLK KSSKADDFLG VEDIFSHSGD KKASLKPPVG KALAMFSGKR NPNDNHFSRK KH

Best Arabidopsis Sequence Match ( AT5G41190.1 )
(BLAST)

001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH

Arabidopsis Description

RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.