Factsheet for VIT_02s0025g03690.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46387	Canola	cytosol	54.19	63.17
Bra025513.1-P	Field mustard	cytosol	56.4	62.3
CDY39753	Canola	cytosol	53.24	62.29
KRH59854	Soybean	nucleus, plastid	61.3	61.39
AT5G41190.1	Thale cress	cytosol	58.29	61.3
PGSC0003DMT400076613	Potato	plastid	61.3	60.62
KRH41155	Soybean	nucleus	60.35	60.25
Solyc08g007990.2.1	Tomato	plastid	60.98	60.12
GSMUA_Achr9P23650_001	Banana	cytosol	54.19	59.76
PGSC0003DMT400014917	Potato	plastid	60.03	59.19
CDX67491	Canola	cytosol	52.13	59.14
Bra028490.1-P	Field mustard	cytosol, plastid	53.71	59.03
HORVU6Hr1G007020.2	Barley	cytosol, plastid	45.97	52.06
Os02t0114700-01	Rice	cytosol	46.76	51.39
EES04356	Sorghum	plastid	46.29	50.34
TraesCS6B01G053000.1	Wheat	plastid	46.6	50.26
TraesCS6D01G043500.1	Wheat	cytosol, nucleus, peroxisome, plastid	46.76	50.25
Zm00001d014988_P001	Maize	plastid	45.18	50.18
TraesCS6A01G037800.1	Wheat	cytosol, nucleus, peroxisome, plastid	46.13	49.83
Zm00001d054047_P001	Maize	cytosol, plastid	44.71	48.63
CDY66426	Canola	cytosol, plastid	35.39	47.76
CDY25417	Canola	endoplasmic reticulum, extracellular	29.54	30.02

Protein Annotations

EntrezGene:100258154	wikigene:100258154	MapMan:17.1.1.8.3	MapMan:17.1.3.2.1.6	Gene3D:3.30.40.120	Gene3D:3.40.50.1010
EMBL:AM483883	ProteinID:CAN66411	ProteinID:CAN66411.1	ProteinID:CCB58359	ProteinID:CCB58359.1	ncoils:Coil
UniProt:F6HUD6	EMBL:FN596251	GO:GO:0000469	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518
GO:GO:0004521	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006364	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009553
GO:GO:0009555	GO:GO:0009987	GO:GO:0016787	GO:GO:0030490	GO:GO:0030688	GO:GO:0042274
GO:GO:0046872	GO:GO:0090502	InterPro:IPR036283	EntrezGene:LOC100258154	wikigene:LOC100258154	InterPro:NOB1_Zf-like_sf
InterPro:NOB1_Zn-bd	PFAM:PF08772	PFAM:PF17146	PANTHER:PTHR12814	InterPro:Ribonuclease_PIN	SUPFAM:SSF144206
UniParc:UPI0002108077	ArrayExpress:VIT_02s0025g03690	EnsemblPlantsGene:VIT_02s0025g03690	EnsemblPlants:VIT_02s0025g03690.t01	RefSeq:XP_002269627	RefSeq:XP_002269627.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:3211246..3214915

Molecular Weight (calculated)

69804.2 Da

IEP (calculated)

5.675

GRAVY (calculated)

-0.648

Length

633 amino acids

Sequence
(BLAST)

001: MEEPPSQAPC WSNIVKAQPP PKPHHHQQAL IPPNLPVGSC KSSKGISIAV VDATAIIQGG EQLTRCADKF VSVSEVIDEV RDPVSRHKLA FVPFTIDTME
101: PSPESLKKVI NFARATGDLQ TLSDVDLKLI ALTYMLEAQI HGTKHLRDSP PPIHAVNVKR LPEKDMPGWG SNVPNLEEWE ALEHEVEDGS NPNSRILPLT
201: DLNLNVIPAD DHSENGLTGN GGEARSEDQE DTDPTSRRPM RYLPKKKEIK IEGKKMVADG VDASQGQYGD NAGDWLPAVS RSTHRRYLRR KARHELHEAS
301: LGNGHQHDAE ENMENNIIED TECADELMHE SPEGKLVGNG ITEESGTTGG KEGDGNLSSI LQQMRLEEGS LKDLQEGKEG DFLCGGSESN NCTVAESTSD
401: NNAHIAVEED EVETIDERLD HLEISSQMSE SVDVSYIDDE SSEQSWMLKS LSDSSVACVT SDFAMQNVLL QMGLRLLAPG GMQIRQLHRW ILKCHACNEV
501: TAEIGRIFCP RCGNGGTLRK VAVTVGENGI ILAARKPRIS LRGTKFSLPL PRGGRDAITK NPILREDQLP HKLLHPKTKK KANKPGDEFF ASDDFFSHHT
601: DKKTSLRPPV REALAVFSGK RNPNDNHFSR SKR

Best Arabidopsis Sequence Match ( AT5G41190.1 )
(BLAST)

001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH

Arabidopsis Description

RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.