Factsheet for TraesCS6D01G043500.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G007020.2	Barley	cytosol, plastid	88.29	93.02
TraesCS6A01G037800.1	Wheat	cytosol, nucleus, peroxisome, plastid	92.53	93.0
TraesCS6B01G053000.1	Wheat	plastid	92.02	92.33
Os02t0114700-01	Rice	cytosol	77.42	79.17
EES04356	Sorghum	plastid	75.38	76.29
Zm00001d054047_P001	Maize	cytosol, plastid	74.19	75.09
Zm00001d014988_P001	Maize	plastid	72.16	74.56
GSMUA_Achr9P23650_001	Banana	cytosol	54.67	56.1
CDY39753	Canola	cytosol	47.03	51.2
CDY46387	Canola	cytosol	46.35	50.28
Bra025513.1-P	Field mustard	cytosol	48.05	49.39
CDX67491	Canola	cytosol	46.35	48.92
VIT_02s0025g03690.t01	Wine grape	cytosol	50.25	46.76
Bra028490.1-P	Field mustard	cytosol, plastid	45.5	46.53
PGSC0003DMT400076613	Potato	plastid	50.42	46.41
AT5G41190.1	Thale cress	cytosol	47.2	46.18
PGSC0003DMT400014917	Potato	plastid	48.73	44.7
KRH59854	Soybean	nucleus, plastid	47.88	44.62
Solyc08g007990.2.1	Tomato	plastid	48.56	44.55
KRH41155	Soybean	nucleus	46.86	43.53
CDY66426	Canola	cytosol, plastid	32.09	40.3
CDY25417	Canola	endoplasmic reticulum, extracellular	23.26	21.99

Protein Annotations

MapMan:17.1.1.8.3	MapMan:17.1.3.2.1.6	Gene3D:3.30.40.120	Gene3D:3.40.50.1010	GO:GO:0000469	GO:GO:0003674
GO:GO:0003824	GO:GO:0004518	GO:GO:0004521	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006364	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009553	GO:GO:0009555	GO:GO:0009987	GO:GO:0016787	GO:GO:0042274	InterPro:IPR036283
InterPro:NOB1_Zf-like_sf	InterPro:NOB1_Zn-bd	InterPro:Nob1_euk	PFAM:PF08772	PFAM:PF17146	PIRSF:PIRSF037125
PANTHER:PTHR12814	InterPro:Ribonuclease_PIN	SUPFAM:SSF144206	EnsemblPlantsGene:TraesCS6D01G043500	EnsemblPlants:TraesCS6D01G043500.1	TIGR:cd09876
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:18012891..18015968

Molecular Weight (calculated)

63239.4 Da

IEP (calculated)

4.992

GRAVY (calculated)

-0.459

Length

589 amino acids

Sequence
(BLAST)

001: MEEAWPALGP AAGDAAFPPP PPPGAPAGGG APVAWGAAAT ARREAVAKES PAQAVSRIVS SCANSSGLAV AVVDANAVIS GGAALASTAG RLVTVPEVLE
101: EVRDAAARRR LALLPTPVET VEPAPEFVKR VVKFARETGD LQTLSDVDMK IIALAYMLEA EVHGTSHLRE HPPPLHVVSV RTLQEAPLPG WGSNVPNLEE
201: WEALDKMSEA GGNLNSRILP LKDLENQEIP TSDTNSISET QGGEEFQPSK KDACIPWEDD ENNEGWLPAV GRTTHRKYLR RKARRDALKA SGESFDTSSV
301: APSVDEDNDL SENGLDSVDG PSAVPEKTRS NTDNLESLEG NEPKIAGDQL SNGENGVGDA DTVEGIIDTD SCTEQLDNLD IKSETEEGVS ASFVDDESSE
401: QSWALRSLSE STVACVTSDY AMQNVILQIG LRLLAPGGMQ IRQLHRWVLR CHACYKVTQE IGKIFCPKCG NGGTLRKVSV TVGENGITMA SRRPRVTLRG
501: TKFSLPMPQG GRDAVIKNPI LREDQLPQKV LHPKSKKSSK LGDDFLGAED IFTHSGEKKV ELKPPVRKAL AMFSGKRNPN DNHFSRKKN

Best Arabidopsis Sequence Match ( AT5G41190.1 )
(BLAST)

001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH

Arabidopsis Description

RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.