Factsheet for GSMUA_Achr3P23690_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	extracellular
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030030.1-P	Field mustard	nucleus	60.85	47.01
CDY15727	Canola	nucleus	60.35	46.63
CDY03901	Canola	nucleus	60.35	46.45
KRH14043	Soybean	cytosol	61.1	45.79
AT1G24290.1	Thale cress	nucleus	59.85	45.71
VIT_03s0017g02320.t01	Wine grape	nucleus	61.85	45.26
Solyc03g118320.1.1	Tomato	nucleus	61.6	42.37
PGSC0003DMT400036771	Potato	nucleus	61.6	42.15
PGSC0003DMT400054245	Potato	mitochondrion	4.99	25.32

Protein Annotations

Gene3D:1.10.3710.10	Gene3D:1.10.8.10	Gene3D:1.20.272.10	Gene3D:3.40.50.300	MapMan:35.2	InterPro:AAA+_ATPase
InterPro:AAA_assoc_2	InterPro:ATPase_AAA_core	InterPro:DNA_pol3_clamp-load_cplx_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G23690_001
EnsemblPlants:GSMUA_Achr3P23690_001	EnsemblPlants:GSMUA_Achr3T23690_001	InterPro:IPR015940	UniProt:M0SH85	InterPro:MgsA_C	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF00627	PFAM:PF12002	PFAM:PF16193	PFscan:PS50030	PANTHER:PTHR13779
PANTHER:PTHR13779:SF7	SMART:SM00382	SUPFAM:SSF46934	SUPFAM:SSF48019	SUPFAM:SSF52540	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI0002955EA9	SEG:seg	:	:	:

Description

Putative Replication-associated recombination protein A [Source:GMGC_GENE;Acc:GSMUA_Achr3G23690_001]

Coordinates

chr3:-:24460539..24462119

Molecular Weight (calculated)

43201.4 Da

IEP (calculated)

9.069

GRAVY (calculated)

-0.316

Length

401 amino acids

Sequence
(BLAST)

001: MEQLLSMGFS EDLASEALAA TGGHSPLAAA DWILTRSSSS SSVPPPPLPP SQSPSTQPCL ERFFASSFAI PKTLNPSSSS SAPKTPNPST STSSSSPSSL
101: PIKRRHPSAA APLSDRMRPG TLDSIVGQDH LLGPSSLLRS SLLPSLVLWG PPGSGKTTLA RALAASLPGS LYTFVPLSAV SAGVRDLRDA IDGARRARSH
201: GRRTVLFVDE IHRFSKSQQD SFLPAIEDGS IILVGATTEN PSFQLTTPLL SRCRGNLAVT LDQAKEAMQC KHLAYDRAGE EHYNLISALH KSMRGSDADA
301: AIYWLARMLE GGEQPLYIAR RLVRFAMYRA LGEAKRVVKE SSGGNEGVPL HLRNAPTKLM KDMGYGKDYM YPPDHKDCSS QTYLPPSLLG HKFLDWPPQD
401: E

Best Arabidopsis Sequence Match ( AT1G24290.1 )
(BLAST)

001: MEQLVSMGFS SDLAAEALTA TGGDSIQKAT DWILSHRSSP QSTATLQPKL DRFLRLHPKA LAPAMGDDSS KRPNPKTQIH VAADDSNKRH KLSSSSHRQH
101: QPLSERMRPR TLDDVVGQDH LLSPSSLLRS AVESNRLPSI VFWGPPGTGK TSIAKSLINS SKDPSLYRFV SLSAVTSGVK DVRDAVESAK RLNLEGRKRT
201: VLFMDEVHRF NKSQQDTFLP VIEDGSILFI GATTENPSFH LITPLLSRCR VLTLNPLKPN HVETLLRRAV DDSERGLPNS VEVDDSVIEF LANNCDGDAR
301: VALNALEISA TMATTRAGTD AVVSIDDAKE ALQCKHLAYD KAGEQHYNLI SALHKSMRGG DANAAIYWLA RMLEGGEEPL YIARRLIRFA SEDIGLADPS
401: ALTQAVACYQ ASHFLGMPEC NVILAQCTAY LALAPKSIAV YRAIGAAQKV VKDSVGQNEG VPLHLRNAPT KLMKELGYGK EYIYPPSDPS SAAGQTYLPP
501: SLLHHKFLEW PEGASGDFQD QEHRL

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:O48696]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.