CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054245	Potato	mitochondrion	13.08	88.61
Bra030030.1-P	Field mustard	nucleus	66.36	68.4
VIT_03s0017g02320.t01	Wine grape	nucleus	69.91	68.25
CDY15727	Canola	nucleus	65.98	68.02
CDY03901	Canola	nucleus	65.42	67.18
AT1G24290.1	Thale cress	nucleus	65.23	66.48
PGSC0003DMT400036771	Potato	nucleus	69.16	63.14
Solyc03g118320.1.1	Tomato	nucleus	68.22	62.61
GSMUA_Achr3P23690_001	Banana	nucleus	45.79	61.1

Protein Annotations

Gene3D:1.10.3710.10	Gene3D:1.10.8.10	Gene3D:1.10.8.60	Gene3D:1.20.272.10	EntrezGene:100799257	Gene3D:3.40.50.300
MapMan:35.2	InterPro:AAA+_ATPase	InterPro:AAA_assoc_2	EMBL:ACUP02008492	InterPro:ATPase_AAA_core	InterPro:DNA_pol3_clamp-load_cplx_C
EnsemblPlantsGene:GLYMA_14G003100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1M653	InterPro:IPR015940	EnsemblPlants:KRH14043
ProteinID:KRH14043	ProteinID:KRH14043.1	InterPro:MgsA_C	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF00627
PFAM:PF12002	PFAM:PF16193	PFscan:PS50030	PANTHER:PTHR13779	PANTHER:PTHR13779:SF7	SMART:SM00165
SMART:SM00382	SUPFAM:SSF46934	SUPFAM:SSF48019	SUPFAM:SSF52540	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI00023D46D2	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:304142..306158

Molecular Weight (calculated)

58654.0 Da

IEP (calculated)

7.112

GRAVY (calculated)

-0.227

Length

535 amino acids

Sequence
(BLAST)

001: MEMQQLLSMG FPDELAAQAL AATGGKSTVK ATEWILSHKP NSSTFQPKLD RFFHSQSQEH DEPSKRPKPS PSPSPSPAQP QHWPSFFFKI ADKKHANTHI
101: HEPLYERLRP RTLDDVVGQE HLLAPNSLLR SAIQRNRLPS ILLWGPPGTG KTTIAKAIVN STPSTNSYRF VSLSAVTSGV KDVRDAVDEA RKLRLKSNQT
201: TVLFVDEVHR FNKSQQDSFL PVIEDGSIVF LGATTENPSF HLITPLLSRC RVLTLNPLQP HHLALLLNRA VTHTDKGLMQ SVGVHVDVSE EVVDFISNNC
301: DGDARVALNA LEIAAVTAAA RLQQGMELDL HTNEECKDDV AAAAAVVVSV ADAKEALQCK HVAYDKAGEE HYNVISALHK SMRGSDANAA IYWLARMLEG
401: GEEPLYIARR LIRFASEDVG LADPLALNQA VSCYQACHFI GMPECNVILA QCVAYLALAP KSVAVYRAIG AAQKAVRESA GHNEGVPLHL RNAPTKLMKD
501: IGYGKGYIYT PDNPTATQTY LPPSLLGHKF LDWPE

Best Arabidopsis Sequence Match ( AT1G24290.1 )
(BLAST)

001: MEQLVSMGFS SDLAAEALTA TGGDSIQKAT DWILSHRSSP QSTATLQPKL DRFLRLHPKA LAPAMGDDSS KRPNPKTQIH VAADDSNKRH KLSSSSHRQH
101: QPLSERMRPR TLDDVVGQDH LLSPSSLLRS AVESNRLPSI VFWGPPGTGK TSIAKSLINS SKDPSLYRFV SLSAVTSGVK DVRDAVESAK RLNLEGRKRT
201: VLFMDEVHRF NKSQQDTFLP VIEDGSILFI GATTENPSFH LITPLLSRCR VLTLNPLKPN HVETLLRRAV DDSERGLPNS VEVDDSVIEF LANNCDGDAR
301: VALNALEISA TMATTRAGTD AVVSIDDAKE ALQCKHLAYD KAGEQHYNLI SALHKSMRGG DANAAIYWLA RMLEGGEEPL YIARRLIRFA SEDIGLADPS
401: ALTQAVACYQ ASHFLGMPEC NVILAQCTAY LALAPKSIAV YRAIGAAQKV VKDSVGQNEG VPLHLRNAPT KLMKELGYGK EYIYPPSDPS SAAGQTYLPP
501: SLLHHKFLEW PEGASGDFQD QEHRL

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:O48696]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.