Factsheet for AT1G24290.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030030.1-P	Field mustard	nucleus	86.86	87.86
PGSC0003DMT400054245	Potato	mitochondrion	13.14	87.34
CDY15727	Canola	nucleus	86.29	87.28
CDY03901	Canola	nucleus	86.48	87.14
VIT_03s0017g02320.t01	Wine grape	nucleus	68.19	65.33
KRH14043	Soybean	cytosol	66.48	65.23
PGSC0003DMT400036771	Potato	nucleus	69.52	62.29
Solyc03g118320.1.1	Tomato	nucleus	68.95	62.09
GSMUA_Achr3P23690_001	Banana	nucleus	45.71	59.85

Protein Annotations

Gene3D:1.10.3710.10	Gene3D:1.10.8.10	Gene3D:1.10.8.60	Gene3D:1.20.272.10	Gene3D:3.40.50.300	MapMan:35.2
EntrezGene:839045	InterPro:AAA+_ATPase	InterPro:AAA_assoc_2	ProteinID:AAC00592.1	ProteinID:AEE30512.1	ArrayExpress:AT1G24290
EnsemblPlantsGene:AT1G24290	RefSeq:AT1G24290	TAIR:AT1G24290	RefSeq:AT1G24290-TAIR-G	EnsemblPlants:AT1G24290.1	TAIR:AT1G24290.1
InterPro:ATPase_AAA_core	Unigene:At.63976	InterPro:DNA_pol3_clamp-load_cplx_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	InterPro:IPR015940	InterPro:MgsA_C	RefSeq:NP_173839.1	UniProt:O48696
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF00627	PFAM:PF12002	PFAM:PF16193	PO:PO:0000037
PO:PO:0000293	PO:PO:0001078	PO:PO:0009010	PFscan:PS50030	PANTHER:PTHR13779	PANTHER:PTHR13779:SF7
SMART:SM00165	SMART:SM00382	SUPFAM:SSF46934	SUPFAM:SSF48019	SUPFAM:SSF52540	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI000009C5B5	:	:	:	:

Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:O48696]

Coordinates

chr1:-:8612505..8614283

Molecular Weight (calculated)

57399.2 Da

IEP (calculated)

7.154

GRAVY (calculated)

-0.316

Length

525 amino acids

Sequence
(BLAST)

001: MEQLVSMGFS SDLAAEALTA TGGDSIQKAT DWILSHRSSP QSTATLQPKL DRFLRLHPKA LAPAMGDDSS KRPNPKTQIH VAADDSNKRH KLSSSSHRQH
101: QPLSERMRPR TLDDVVGQDH LLSPSSLLRS AVESNRLPSI VFWGPPGTGK TSIAKSLINS SKDPSLYRFV SLSAVTSGVK DVRDAVESAK RLNLEGRKRT
201: VLFMDEVHRF NKSQQDTFLP VIEDGSILFI GATTENPSFH LITPLLSRCR VLTLNPLKPN HVETLLRRAV DDSERGLPNS VEVDDSVIEF LANNCDGDAR
301: VALNALEISA TMATTRAGTD AVVSIDDAKE ALQCKHLAYD KAGEQHYNLI SALHKSMRGG DANAAIYWLA RMLEGGEEPL YIARRLIRFA SEDIGLADPS
401: ALTQAVACYQ ASHFLGMPEC NVILAQCTAY LALAPKSIAV YRAIGAAQKV VKDSVGQNEG VPLHLRNAPT KLMKELGYGK EYIYPPSDPS SAAGQTYLPP
501: SLLHHKFLEW PEGASGDFQD QEHRL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.