Factsheet for Bra030030.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15727	Canola	nucleus	98.46	98.46
PGSC0003DMT400054245	Potato	mitochondrion	13.29	87.34
AT1G24290.1	Thale cress	nucleus	87.86	86.86
KRH14043	Soybean	cytosol	68.4	66.36
VIT_03s0017g02320.t01	Wine grape	nucleus	69.75	66.06
PGSC0003DMT400036771	Potato	nucleus	71.29	63.14
Solyc03g118320.1.1	Tomato	nucleus	70.91	63.12
GSMUA_Achr3P23690_001	Banana	nucleus	47.01	60.85

Protein Annotations

Gene3D:1.10.3710.10	Gene3D:1.10.8.10	Gene3D:1.10.8.60	Gene3D:1.20.272.10	Gene3D:3.40.50.300	MapMan:35.2
InterPro:AAA+_ATPase	InterPro:AAA_assoc_2	InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra030030	EnsemblPlants:Bra030030.1	EnsemblPlants:Bra030030.1-P
InterPro:DNA_pol3_clamp-load_cplx_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR015940	UniProt:M4EML0	InterPro:MgsA_C
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF00627	PFAM:PF12002	PFAM:PF16193	PRINTS:PR00830
PFscan:PS50030	PANTHER:PTHR13779	PANTHER:PTHR13779:SF7	SMART:SM00165	SMART:SM00382	SUPFAM:SSF46934
SUPFAM:SSF48019	SUPFAM:SSF52540	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00025411BF	SEG:seg

Description

AT1G24290 (E=8e-240) | AAA-type ATPase family protein

Coordinates

chrA07:-:7054782..7056341

Molecular Weight (calculated)

56400.1 Da

IEP (calculated)

7.066

GRAVY (calculated)

-0.289

Length

519 amino acids

Sequence
(BLAST)

001: MEQLVSMGFS SDLAAEALTA TGGDSIQKAT DWILSHRPPL QTTTATSQPK LDRFLRPNSK TLTPVGDSNK RPKLSPPPST HRHRQHQTLS ERMRPRTLDD
101: VVGQDHLLSP SSLLRSAVDS NRLPSIIFWG PPGTGKTSIA KSLINSCKDP SQYRFVSLSA VTSGVKDVRD AVETAKKLNL EGKKRTVLFM DEVHRFNKSQ
201: QDSFLPVIED GSILFVGATT ENPSFHLITP LLSRCRVLTL NPLKPNHVET LLKRAVDDDS VRGLSSNVEV DDSVVEFLAN NCDGDARVAL NALEISATMA
301: TARGGDGVGV GVAAVVSLDD AKEALQSKHL AYDKAGEQHY NLISALHKSM RGGDANAAIY WLARMLEGGE EPLYIARRLI RFASEDVGLA DPSALTQAVA
401: CYQASHFLGM PECNVILAQC AAYLALAPKS IAVYRAIGAA RKVVKDSVGQ NEGVPVHLRN APTKLMKELG YGKEYIYPPD DPTSAAAQTY LPSSLLHYKF
501: LDWPEGASGD GQEQEEHRL

Best Arabidopsis Sequence Match ( AT1G24290.1 )
(BLAST)

001: MEQLVSMGFS SDLAAEALTA TGGDSIQKAT DWILSHRSSP QSTATLQPKL DRFLRLHPKA LAPAMGDDSS KRPNPKTQIH VAADDSNKRH KLSSSSHRQH
101: QPLSERMRPR TLDDVVGQDH LLSPSSLLRS AVESNRLPSI VFWGPPGTGK TSIAKSLINS SKDPSLYRFV SLSAVTSGVK DVRDAVESAK RLNLEGRKRT
201: VLFMDEVHRF NKSQQDTFLP VIEDGSILFI GATTENPSFH LITPLLSRCR VLTLNPLKPN HVETLLRRAV DDSERGLPNS VEVDDSVIEF LANNCDGDAR
301: VALNALEISA TMATTRAGTD AVVSIDDAKE ALQCKHLAYD KAGEQHYNLI SALHKSMRGG DANAAIYWLA RMLEGGEEPL YIARRLIRFA SEDIGLADPS
401: ALTQAVACYQ ASHFLGMPEC NVILAQCTAY LALAPKSIAV YRAIGAAQKV VKDSVGQNEG VPLHLRNAPT KLMKELGYGK EYIYPPSDPS SAAGQTYLPP
501: SLLHHKFLEW PEGASGDFQD QEHRL

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:O48696]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.