Factsheet for PGSC0003DMT400054245

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030030.1-P	Field mustard	nucleus	87.34	13.29
CDY15727	Canola	nucleus	87.34	13.29
AT1G24290.1	Thale cress	nucleus	87.34	13.14
KRH14043	Soybean	cytosol	88.61	13.08
CDY03901	Canola	nucleus	84.81	12.86
PGSC0003DMT400036771	Potato	nucleus	94.94	12.8
Solyc03g118320.1.1	Tomato	nucleus	92.41	12.52
VIT_03s0017g02320.t01	Wine grape	nucleus	82.28	11.86
GSMUA_Achr3P23690_001	Banana	nucleus	25.32	4.99

Protein Annotations

Gene3D:1.20.272.10	MapMan:35.2	InterPro:DNA_pol3_clamp-load_cplx_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:M1BW05	InterPro:MgsA_C	PFAM:PF12002	EnsemblPlantsGene:PGSC0003DMG400021041
PGSC:PGSC0003DMG400021041	EnsemblPlants:PGSC0003DMT400054245	PANTHER:PTHR13779	PANTHER:PTHR13779:SF7	SUPFAM:SSF48019	UniParc:UPI000294ED01

Description

AAA-type ATPase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021041]

Coordinates

chr11:-:12215883..12216401

Molecular Weight (calculated)

8370.2 Da

IEP (calculated)

4.478

GRAVY (calculated)

0.480

Length

79 amino acids

Sequence
(BLAST)

1: MLEGGEEPLY IPQGLVRFAS EDVGLADPSA LGQAVACYQA CHFIGMPECN VILAQCVAYL ALAPKSIAVY RAIGAAQKW

Best Arabidopsis Sequence Match ( AT1G24290.1 )
(BLAST)

001: MEQLVSMGFS SDLAAEALTA TGGDSIQKAT DWILSHRSSP QSTATLQPKL DRFLRLHPKA LAPAMGDDSS KRPNPKTQIH VAADDSNKRH KLSSSSHRQH
101: QPLSERMRPR TLDDVVGQDH LLSPSSLLRS AVESNRLPSI VFWGPPGTGK TSIAKSLINS SKDPSLYRFV SLSAVTSGVK DVRDAVESAK RLNLEGRKRT
201: VLFMDEVHRF NKSQQDTFLP VIEDGSILFI GATTENPSFH LITPLLSRCR VLTLNPLKPN HVETLLRRAV DDSERGLPNS VEVDDSVIEF LANNCDGDAR
301: VALNALEISA TMATTRAGTD AVVSIDDAKE ALQCKHLAYD KAGEQHYNLI SALHKSMRGG DANAAIYWLA RMLEGGEEPL YIARRLIRFA SEDIGLADPS
401: ALTQAVACYQ ASHFLGMPEC NVILAQCTAY LALAPKSIAV YRAIGAAQKV VKDSVGQNEG VPLHLRNAPT KLMKELGYGK EYIYPPSDPS SAAGQTYLPP
501: SLLHHKFLEW PEGASGDFQD QEHRL

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:O48696]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.