CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15727	Canola	nucleus	95.39	95.76
AT1G24290.1	Thale cress	nucleus	87.14	86.48
PGSC0003DMT400054245	Potato	mitochondrion	12.86	84.81
VIT_03s0017g02320.t01	Wine grape	nucleus	69.67	66.24
KRH14043	Soybean	cytosol	67.18	65.42
Solyc03g118320.1.1	Tomato	nucleus	71.02	63.46
PGSC0003DMT400036771	Potato	nucleus	71.21	63.31
GSMUA_Achr3P23690_001	Banana	nucleus	46.45	60.35

Protein Annotations

Gene3D:1.10.3710.10	Gene3D:1.10.8.10	Gene3D:1.10.8.60	Gene3D:1.20.272.10	Gene3D:3.40.50.300	MapMan:35.2
GO:A0A078ERM1	InterPro:AAA+_ATPase	InterPro:AAA_assoc_2	InterPro:ATPase_AAA_core	EnsemblPlants:CDY03901	ProteinID:CDY03901
ProteinID:CDY03901.1	InterPro:DNA_pol3_clamp-load_cplx_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00117389001	InterPro:IPR015940
InterPro:MgsA_C	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF00627	PFAM:PF12002	PFAM:PF16193
PRINTS:PR00830	PFscan:PS50030	PANTHER:PTHR13779	PANTHER:PTHR13779:SF7	SMART:SM00165	SMART:SM00382
SUPFAM:SSF46934	SUPFAM:SSF48019	SUPFAM:SSF52540	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0004EB7E7F
SEG:seg	:	:	:	:	:

Description

BnaC07g11260D

Coordinates

chrLK031947:+:697672..699237

Molecular Weight (calculated)

56726.3 Da

IEP (calculated)

7.154

GRAVY (calculated)

-0.345

Length

521 amino acids

Sequence
(BLAST)

001: MEQLVSMGFS SDLAGEALTA TGGDSIQKAT DWILSHRPPH QTTTATSQPK LDRFLRPNSK TLTPVGDSNK RPKLSPPPST HRHRHRHRQH QPLSERMRPR
101: TLDDVVGQDH LLSPSSLLRS AVESNRLPSI IFWGPPGTGK TSIAKSLINS CKDPSQYRFV SLSAVTSGVK DVRDAVESAK KLNLEGKKRT VLFMDEVHRF
201: NKSQQDSFLP VIEDGSILFI GATTENPSFH LITPLLSRCR VLTLNPLKPN HVETLLKRAA DDDSGRGLSS NVEVDDSVIE FLANNCDGDA RVALNALEIS
301: ATMATARAGS GEGDVVGVAA VVALDDAKEA LQSKHLAYDK AGDQHYNLIS ALHKSMRGGD ANAAIYWLAR MLEGGEEPLY IARRLIRFAS EDVGLADPSA
401: LTQAVACYQA SHFLGMPECN VILAQCAAYL ALAPKSIAVY RAIETARKVV KDSVGHNEGV PLHLRNAPTK LMKELGYGKE YIYPPDDPSS AAAQTYLPSS
501: LLHYKFLDWP EGASGDGQEQ E

Best Arabidopsis Sequence Match ( AT1G24290.1 )
(BLAST)

001: MEQLVSMGFS SDLAAEALTA TGGDSIQKAT DWILSHRSSP QSTATLQPKL DRFLRLHPKA LAPAMGDDSS KRPNPKTQIH VAADDSNKRH KLSSSSHRQH
101: QPLSERMRPR TLDDVVGQDH LLSPSSLLRS AVESNRLPSI VFWGPPGTGK TSIAKSLINS SKDPSLYRFV SLSAVTSGVK DVRDAVESAK RLNLEGRKRT
201: VLFMDEVHRF NKSQQDTFLP VIEDGSILFI GATTENPSFH LITPLLSRCR VLTLNPLKPN HVETLLRRAV DDSERGLPNS VEVDDSVIEF LANNCDGDAR
301: VALNALEISA TMATTRAGTD AVVSIDDAKE ALQCKHLAYD KAGEQHYNLI SALHKSMRGG DANAAIYWLA RMLEGGEEPL YIARRLIRFA SEDIGLADPS
401: ALTQAVACYQ ASHFLGMPEC NVILAQCTAY LALAPKSIAV YRAIGAAQKV VKDSVGQNEG VPLHLRNAPT KLMKELGYGK EYIYPPSDPS SAAGQTYLPP
501: SLLHHKFLEW PEGASGDFQD QEHRL

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:O48696]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.