CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030030.1-P	Field mustard	nucleus	98.46	98.46
CDY03901	Canola	nucleus	95.76	95.39
PGSC0003DMT400054245	Potato	mitochondrion	13.29	87.34
AT1G24290.1	Thale cress	nucleus	87.28	86.29
VIT_03s0017g02320.t01	Wine grape	nucleus	69.94	66.24
KRH14043	Soybean	cytosol	68.02	65.98
PGSC0003DMT400036771	Potato	nucleus	71.48	63.31
Solyc03g118320.1.1	Tomato	nucleus	71.1	63.29
GSMUA_Achr3P23690_001	Banana	nucleus	46.63	60.35

Protein Annotations

Gene3D:1.10.3710.10	Gene3D:1.10.8.10	Gene3D:1.10.8.60	Gene3D:1.20.272.10	Gene3D:3.40.50.300	MapMan:35.2
GO:A0A078FSA7	UniProt:A0A078FSA7	InterPro:AAA+_ATPase	InterPro:AAA_assoc_2	InterPro:ATPase_AAA_core	EnsemblPlants:CDY15727
ProteinID:CDY15727	ProteinID:CDY15727.1	InterPro:DNA_pol3_clamp-load_cplx_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00089954001
InterPro:IPR015940	InterPro:MgsA_C	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF00627	PFAM:PF12002
PFAM:PF16193	PRINTS:PR00830	PFscan:PS50030	PANTHER:PTHR13779	PANTHER:PTHR13779:SF7	SMART:SM00165
SMART:SM00382	SUPFAM:SSF46934	SUPFAM:SSF48019	SUPFAM:SSF52540	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI0004EF37E7	SEG:seg	:	:	:	:

Description

BnaA07g08980DBnaA07g08980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSA7]

Coordinates

chrLK032056:-:754101..755660

Molecular Weight (calculated)

56500.1 Da

IEP (calculated)

7.097

GRAVY (calculated)

-0.316

Length

519 amino acids

Sequence
(BLAST)

001: MDQLVSMGFS SDLASEALTA TGGDSIQKAT DWILSHRPPH QTTTATSQPK LDRFLRPNSK TLTPVGDSNK RPKLSPPPST HRHRQHQPLS ERMRPRTLDD
101: VVGQDHLLSP SSLLRSAVDS NRLPSIIFWG PPGTGKTSIA KSLINSCKDP SQYRFVSLSA VTSGVKDVRD AVETAKKLNL EGKKRTVLFM DEVHRFNKSQ
201: QDSFLPVIED GSILFIGATT ENPSFHLITP LLSRCRVLTL NPLKPNHVET LLKRAVDDDS VRGLSSNVEV DDSFVEFLAN NCDGDARVAL NALEISATMA
301: TARGGDGVGV GVAAVVSLDD AKEALQSKHL AYDKAGDQHY NLISALHKSM RGGDANAAIY WLARMLEGGE EPLYIARRLI RFASEDVGLA DPSALTQAVA
401: CYQASHFLGM PECNVILAQC AAYLALAPKS IAVYRAIGAA RKVVKDSVGQ NEGVPVHLRN APTKLMKELG YGKEYIYPPD DPTSAAAQTY LPSSLLHYKF
501: LDWPEGTSGD GQEQEEHRL

Best Arabidopsis Sequence Match ( AT1G24290.1 )
(BLAST)

001: MEQLVSMGFS SDLAAEALTA TGGDSIQKAT DWILSHRSSP QSTATLQPKL DRFLRLHPKA LAPAMGDDSS KRPNPKTQIH VAADDSNKRH KLSSSSHRQH
101: QPLSERMRPR TLDDVVGQDH LLSPSSLLRS AVESNRLPSI VFWGPPGTGK TSIAKSLINS SKDPSLYRFV SLSAVTSGVK DVRDAVESAK RLNLEGRKRT
201: VLFMDEVHRF NKSQQDTFLP VIEDGSILFI GATTENPSFH LITPLLSRCR VLTLNPLKPN HVETLLRRAV DDSERGLPNS VEVDDSVIEF LANNCDGDAR
301: VALNALEISA TMATTRAGTD AVVSIDDAKE ALQCKHLAYD KAGEQHYNLI SALHKSMRGG DANAAIYWLA RMLEGGEEPL YIARRLIRFA SEDIGLADPS
401: ALTQAVACYQ ASHFLGMPEC NVILAQCTAY LALAPKSIAV YRAIGAAQKV VKDSVGQNEG VPLHLRNAPT KLMKELGYGK EYIYPPSDPS SAAGQTYLPP
501: SLLHHKFLEW PEGASGDFQD QEHRL

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:O48696]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.